CK739664

Overview
NameCK739664
Unique NameCK739664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739664 vs. ExPASy Swiss-Prot
Match: PM1_SOYBN (18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.094e-37
Identity = 80/140 (57.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:   94 NVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATGGLGY---------TTADSYSQSTTGMHGRPTGGHQMSALAGHGTGQPAAQVTEGVGGSHPIGVNTGTGHN-RAHN 483
            N+ ASAKAGMEKTKAT QEK ++M A DPV+KE+AT+KKE +  QAEL+KQ AR+HN+AAKQ+    G+         T   + + STTG +G+P G HQ SA+ GHGTGQP   VTEGV GSHPIG N G G    AHN
Sbjct:   17 NIGASAKAGMEKTKATVQEKAERMTARDPVQKELATQKKEAKMNQAELDKQAARQHNTAAKQSATTAGHMGHGHHTTGTGTGTATYSTTGEYGQPMGAHQTSAMPGHGTGQPTGHVTEGVVGSHPIGTNRGPGGTATAHN 156          
BLAST of CK739664 vs. ExPASy Swiss-Prot
Match: LEA13_GOSHI (Late embryogenesis abundant protein D-113 OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 64/121 (52.89%), Postives = 77/121 (63.64%), Query Frame = 1
Query:   94 NVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQ----ATGGLGYTTADSYSQSTTGMHGRPTGGHQ----MSALAGHGTGQPAAQVTEGVGG 432
            + AASAKAGMEK KA+ QEKVD+MK  DP EKEMA E+KEER+  AEL KQEAR HN+ A        GG GYTTA  Y+   TG +G  TGGH      +A +G+ TG+     + G GG
Sbjct:    6 DAAASAKAGMEKAKASMQEKVDQMKTRDPNEKEMARERKEERQEDAELRKQEARHHNATAGHVGGGGIGGTGYTTA-GYNIGDTGGYG-GTGGHDNRGYPTAGSGYDTGRQDDLSSMGFGG 124          
BLAST of CK739664 vs. ExPASy Swiss-Prot
Match: LEA11_HELAN (11 kDa late embryogenesis abundant protein OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 56/89 (62.92%), Postives = 68/89 (76.40%), Query Frame = 1
Query:   94 NVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQATG-GLGYTTADSYSQSTTGMHGRPTG 357
            NVAASAKAGMEKTKA+ QEK +KM AHDP++KEMA EKKEER+ +AE EKQ A+EHN+A KQ TG G G     ++S +TT + G  TG
Sbjct:   17 NVAASAKAGMEKTKASLQEKGEKMTAHDPMQKEMAREKKEERKHEAEYEKQAAKEHNAAQKQTTGIGTG-----THSYTTTNVTGHRTG 100          
BLAST of CK739664 vs. ExPASy Swiss-Prot
Match: LE25_SOLLC (Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.278e-14
Identity = 41/82 (50.00%), Postives = 56/82 (68.29%), Query Frame = 1
Query:   94 NVAASAKAGMEKTKATAQEKVDKMKAHDPVEKEMATEKKEERRMQAELEKQEAREHNSAAKQ--ATGGLGYTTADSYSQSTT 333
            + A++AKAGMEKTKA  QEK ++M   DP++KEMATEKKE+R   AE+ K++A+  ++A KQ  AT G G T   +    TT
Sbjct:    6 DAASAAKAGMEKTKANVQEKAERMTTRDPLKKEMATEKKEDRVAAAEMGKRDAKAQHAAEKQGAATTGTGTTGYGATGNHTT 87          
The following BLAST results are available for this feature:
BLAST of CK739664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PM1_SOYBN3.094e-3757.1418 kDa seed maturation protein OS=Glycine max GN=G... [more]
LEA13_GOSHI4.796e-2252.89Late embryogenesis abundant protein D-113 OS=Gossy... [more]
LEA11_HELAN4.796e-2262.9211 kDa late embryogenesis abundant protein OS=Heli... [more]
LE25_SOLLC6.278e-1450.00Protein LE25 OS=Solanum lycopersicum GN=LE25 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6051 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739664 ID=CK739664; Name=CK739664; organism=Citrus sinensis; type=EST; length=484bp
ACGATATTGGTTGACGGTTAGCATAATTGCATTCAAGGCAAAGAAGAAAT
TTGAAGAAAGTGAAAATGCAGTCCATGAAGGAATCGGCAGCCTAACGTTG
CGGCCTCTGCCAAGGCTGGCATGGAGAAAACTAAAGCCACGGCCCAAGAG
AAGGTTGATAAAATGAAAGCGCATGATCCAGTAGAGAAAGAAATGGCCAC
GGAGAAGAAAGAGGAAAGAAGAATGCAAGCGGAGCTCGAGAAGCAGGAGG
CTCGTGAGCACAATTCGGCGGCAAAGCAAGCGACGGGTGGGCTTGGCTAT
ACAACAGCTGACAGCTACTCGCAGTCGACCACTGGGATGCACGGTCGTCC
GACTGGAGGCCATCAGATGTCGGCCCTTGCCGGTCATGGAACAGGGCAAC
CGGCTGCGCAGGTGACTGAAGGGGTGGGGGGGTCGCATCCGATTGGAGTC
AATACTGGGACGGGCCACAACCGCGCACATAACA
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