CK739673

Overview
NameCK739673
Unique NameCK739673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length235
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK739673 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.131e-29
Identity = 58/75 (77.33%), Postives = 67/75 (89.33%), Query Frame = 2 
Query:    5 NLDAWIFHNGGEVFSILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASFALGEEFYLGGIIGAV 229
            +L+ W  H+GGE+F+ILYAG VASGIAF+VQIWCIDRGGPVFVAVYQPVQT+ VAIMAS  LGE+FYLGGI GA+
Sbjct:  253 DLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAI 327
The following BLAST results are available for this feature:
BLAST of CK739673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA6.131e-2977.33Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6060 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739673 ID=CK739673; Name=CK739673; organism=Citrus sinensis; type=EST; length=235bp
GAGAAACCTTGATGCATGGATTTTCCACAATGGTGGAGAAGTCTTCTCCA
TCCTCTACGCAGGAGTGGTGGCATCAGGGATAGCATTCGCTGTACAGATA
TGGTGCATCGACAGAGGTGGTCCTGTCTTCGTTGCTGTGTATCAACCTGT
TCAGACTCTCGTTGTCGCCATTATGGCCTCCTTTGCTTTAGGCGAAGAGT
TCTACTTGGGCGGGATCATCGGGGCAGTGCGTGAT
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