CK739675

Overview
NameCK739675
Unique NameCK739675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length308
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.592e-45
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 3
Query:   24 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPCRFIAPFLAELAKKLPNV FLKVDVDELK+VA +WAVE+MPTFMFLKEGKI+DK
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDK 96          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.348e-44
Identity = 82/95 (86.32%), Postives = 90/95 (94.74%), Query Frame = 3
Query:   24 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPCRFIAPF A+LAKKLPNVLFLKVD DELKSVA+DWA++AMPTFMFLKEGKI+DK
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDK 96          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.058e-41
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 3
Query:   27 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC+FIA F AELAKK+P V FLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 95          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.222e-37
Identity = 68/98 (69.39%), Postives = 86/98 (87.76%), Query Frame = 3
Query:   15 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPCRFIAP LA++AKK+P+V+FLKVDVDELK+V+ +W+VEAMPTF+F+K+GK VD+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDR 102          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.385e-33
Identity = 60/94 (63.83%), Postives = 81/94 (86.17%), Query Frame = 3
Query:   27 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PCRFIAP  AE+AKK  NV+F K+DVDEL++VA ++ VEAMPTF+F+KEG I+D+
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDR 95          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.232e-31
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 3
Query:   27 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPCR I P+++ELAKK P+V F KVDVD+LK VA ++ VEAMP+F+ LKEG+ V++
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVER 95          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.494e-31
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   33 EGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            EG V  CH+ E W  +LQ++ +TK+LV VDFTA+WCGPCR I P   EL+KK P + FLKVDVDEL+ VA +W VEAMPTF+F+K+GK VDK
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDK 94          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.468e-30
Identity = 60/96 (62.50%), Postives = 77/96 (80.21%), Query Frame = 3
Query:   24 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKK-LPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PCR IAP   +LAKK + + +F KVDVDEL+SVA ++ VEAMPTF+F+K G++VDK
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDK 97          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.209e-30
Identity = 58/91 (63.74%), Postives = 77/91 (84.62%), Query Frame = 3
Query:   27 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKI 299
            A EG+VI CHTVE W E+L+ +NE+K+L+V+DFTA+WC PCRFIAP  A+LAKK  +V+F KVDVDEL +VA ++ V+AMPTF+F+KEG+I
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEI 92          
BLAST of CK739675 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.377e-30
Identity = 57/99 (57.58%), Postives = 76/99 (76.77%), Query Frame = 3
Query:   12 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCRFIAPFLAELAKKLPNVLFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDK 308
            A  AA   G+VI  H++E W  Q++++N  K+LVV+DFTASWCGPCR +AP  A+LAKK P  +FLKVDVDELK +A  ++VEAMPTF+F+KEG + D+
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDR 108          
The following BLAST results are available for this feature:
BLAST of CK739675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TRXH_RICCO1.592e-4589.47Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.348e-4486.32Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC4.058e-4184.04Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC1.222e-3769.39Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH5_ARATH2.385e-3363.83Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_FAGES2.232e-3161.70Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_PICMA6.494e-3161.96Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH4_ARATH2.468e-3062.50Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH4.209e-3063.74Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT9.377e-3057.58Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6062 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739675 ID=CK739675; Name=CK739675; organism=Citrus sinensis; type=EST; length=308bp
AACCGCGGAAAGCAGAAATGGCAGCAGCAGAAGAGGGACAAGTCATCGGG
TGCCACACCGTTGAGGCCTGGAACGAGCAGCTCCAGAAGAGCAATGAAAC
CAAACAGCTGGTTGTTGTTGATTTCACTGCTTCATGGTGCGGACCATGCC
GTTTCATTGCTCCTTTCTTGGCAGAGCTGGCCAAGAAACTGCCTAATGTC
CTGTTTCTGAAGGTTGATGTGGATGAACTGAAGAGTGTTGCCACTGACTG
GGCAGTGGAGGCCATGCCAACTTTCATGTTCCTGAAAGAGGGGAAGATTG
TGGACAAG
back to top