CK739676

Overview
NameCK739676
Unique NameCK739676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA19_ARATH (Histone deacetylase 19 OS=Arabidopsis thaliana GN=HDA19 PE=1 SV=2)

HSP 1 Score: 233.417 bits (594), Expect = 2.691e-61
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 2
Query:    2 DDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DDGIDDESYH LFKPI+GKVME+FRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCY+TGVALGVE +DKMP+HEYYEYFGPDY
Sbjct:  237 DDGIDDESYHLLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGVEVEDKMPEHEYYEYFGPDY 349          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA19_MAIZE (Probable histone deacetylase 19 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 8.103e-58
Identity = 102/113 (90.27%), Postives = 108/113 (95.58%), Query Frame = 2
Query:    2 DDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DDGIDDESY  LFKPI+GKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECV++MRSFNVPLLLLGGGGYTIRNVARCWCY+TGVALG E +DKMP +EYYEYFGPDY
Sbjct:  242 DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGQEPEDKMPVNEYYEYFGPDY 354          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA6_ARATH (Histone deacetylase 6 OS=Arabidopsis thaliana GN=HDA6 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.253e-50
Identity = 85/113 (75.22%), Postives = 106/113 (93.81%), Query Frame = 2
Query:    2 DDGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            +DG+DDES+  LF+P+I KVMEV++P AVVLQCGADSLSGDRLGCFNLS+KGHA+C++F+RS+NVPL++LGGGGYTIRNVARCWCY+T VA+GVE D+K+P +EY+EYFGPDY
Sbjct:  241 NDGMDDESFRSLFRPLIQKVMEVYQPEAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSYNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDY 353          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_CHICK (Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.098e-46
Identity = 80/112 (71.43%), Postives = 100/112 (89.29%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP+I KVME F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_RAT (Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_PONAB (Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_MOUSE (Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_HUMAN (Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDAC1_BOVIN (Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 79/112 (70.54%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCG+DSLSGDRLGCFNL+IKGHA+CV+F++SFN+P+L+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDF 341          
BLAST of CK739676 vs. ExPASy Swiss-Prot
Match: HDA1A_XENLA (Probable histone deacetylase 1-A OS=Xenopus laevis GN=hdac1-A PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.872e-46
Identity = 80/112 (71.43%), Postives = 101/112 (90.18%), Query Frame = 2
Query:    5 DGIDDESYHYLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKFMRSFNVPLLLLGGGGYTIRNVARCWCYQTGVALGVEGDDKMPQHEYYEYFGPDY 340
            DGIDDESY  +FKP++ KVME+F+P AVVLQCGADSLSGDRLGCFNL+IKGHA+CV+F+++FN+PLL+LGGGGYTIRNVARCW Y+T VAL  E  +++P ++Y+EYFGPD+
Sbjct:  230 DGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDF 341          
The following BLAST results are available for this feature:
BLAST of CK739676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
HDA19_ARATH2.691e-6193.81Histone deacetylase 19 OS=Arabidopsis thaliana GN=... [more]
HDA19_MAIZE8.103e-5890.27Probable histone deacetylase 19 OS=Zea mays PE=2 S... [more]
HDA6_ARATH1.253e-5075.22Histone deacetylase 6 OS=Arabidopsis thaliana GN=H... [more]
HDAC1_CHICK1.098e-4671.43Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE... [more]
HDAC1_RAT1.872e-4670.54Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac... [more]
HDAC1_PONAB1.872e-4670.54Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=... [more]
HDAC1_MOUSE1.872e-4670.54Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=... [more]
HDAC1_HUMAN1.872e-4670.54Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=... [more]
HDAC1_BOVIN1.872e-4670.54Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 ... [more]
HDA1A_XENLA1.872e-4671.43Probable histone deacetylase 1-A OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6063 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739676 ID=CK739676; Name=CK739676; organism=Citrus sinensis; type=EST; length=341bp
TGATGATGGTATCGATGATGAGAGCTACCATTACTTGTTCAAACCGATAA
TCGGAAAAGTGATGGAAGTTTTTAGACCTGGTGCTGTGGTCCTCCAATGT
GGTGCTGACTCATTGTCTGGGGATAGGTTAGGATGCTTCAATCTTTCAAT
TAAAGGTCATGCAGAATGTGTCAAATTTATGAGATCATTCAATGTGCCTC
TGTTGCTGCTGGGTGGTGGTGGTTACACTATTCGGAATGTTGCTCGTTGC
TGGTGCTACCAGACAGGAGTTGCACTTGGAGTAGAGGGTGATGACAAGAT
GCCACAGCATGAGTATTATGAGTATTTTGGTCCTGACTATA
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