CK739679 | Citrus Genome Database

Overview


Name	CK739679
Unique Name	CK739679
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	530

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI2_TOBAC (Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.693e-54
Identity = 89/130 (68.46%), Postives = 95/130 (73.08%), Query Frame = 1

Query:   97 FSRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 486
            F +   + +       MEYQNKRGGKVKLQSILMPLSEFDHAE+GDALYAME                H  A +NNDVQLADFVESKYL EQVEAIK ISEYVAQLRRVG+GHGVWHFDQMLL  EEVVA
Sbjct:  130 FFKESSEEERGHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEEGDALYAMELALSLAKLTNQKLLNLHAVATRNNDVQLADFVESKYLREQVEAIKMISEYVAQLRRVGKGHGVWHFDQMLLQEEEVVA 259

HSP 2 Score: 60.8474 bits (146), Expect = 1.693e-54
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYH M+AYFDRDNVALKGL
Sbjct:   99 QINVEYNVSYVYHGMYAYFDRDNVALKGL 127

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI3_SOYBN (Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.693e-54
Identity = 86/130 (66.15%), Postives = 95/130 (73.08%), Query Frame = 1

Query:   97 FSRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGEEVVA 486
            F +   + +       MEYQNKRGGKVKLQSI+MPLSEFDH EKGDALYAME                H  A+KNNDVQLADF+ES++L EQVEAIKKISEYVAQLRRVG+GHGVWHFDQMLLH E V A
Sbjct:  127 FFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQVEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVAA 256

HSP 2 Score: 63.5438 bits (153), Expect = 1.693e-54
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYHAMFAYFDRDNVALKGL
Sbjct:   96 QINVEYNVSYVYHAMFAYFDRDNVALKGL 124

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI4_SOYBN (Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.669e-51
Identity = 80/124 (64.52%), Postives = 91/124 (73.39%), Query Frame = 1

Query:   97 FSRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 468
            F +   + +       MEYQNKRGGKVKLQSI+MPLS+FDHA+KGDAL+AME                H  A KN DVQLADFVE++YL EQVEAIK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  118 FFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLH 241

HSP 2 Score: 62.3882 bits (150), Expect = 1.669e-51
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYHAMFAYFDRDNVAL+GL
Sbjct:   87 QINVEYNVSYVYHAMFAYFDRDNVALRGL 115

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI2_VIGUN (Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.067e-50
Identity = 79/124 (63.71%), Postives = 91/124 (73.39%), Query Frame = 1

Query:   97 FSRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 468
            F +   + +       MEYQN+RGGKVKLQSI+MPLSEFDHA+KGDAL+AME                H  A KN DVQLADFVES++L EQVE+IK+ISEYVAQLRRVG+GHGVWHFDQMLLH
Sbjct:  121 FFKESSEEEREHAEKLMEYQNRRGGKVKLQSIVMPLSEFDHADKGDALHAMELALSLEKLTNEKLLHLHSVATKNGDVQLADFVESEFLGEQVESIKRISEYVAQLRRVGKGHGVWHFDQMLLH 244

HSP 2 Score: 61.2326 bits (147), Expect = 1.067e-50
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYHA+FAYFDRDNVAL+GL
Sbjct:   90 QINVEYNVSYVYHALFAYFDRDNVALRGL 118

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI4_ARATH (Ferritin-4, chloroplastic OS=Arabidopsis thaliana GN=FER4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 9.653e-49
Identity = 74/109 (67.89%), Postives = 84/109 (77.06%), Query Frame = 1

Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHG 471
            MEYQNKRGG+VKLQSI+MPLSEF+H +KGDALY ME                H  A+KNNDV LADF+ES++L EQVEAIK ISEYVAQLRRVG+GHG WHF+QMLL G
Sbjct:  151 MEYQNKRGGRVKLQSIVMPLSEFEHVDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDVHLADFIESEFLTEQVEAIKLISEYVAQLRRVGKGHGTWHFNQMLLEG 259

HSP 2 Score: 62.003 bits (149), Expect = 9.653e-49
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYHAM+AYFDRDN+ALKGL
Sbjct:  104 QINVEYNVSYVYHAMYAYFDRDNIALKGL 132

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI2_ARATH (Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.632e-48
Identity = 77/110 (70.00%), Postives = 85/110 (77.27%), Query Frame = 1

Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLHGE 474
            MEYQNKRGG+VKLQSILMP+SEFDH EKGDAL+AME                     KNNDVQL DFVES++L EQVEAIKKISEYVAQLRR+G+GHGVWHFDQMLL+ E
Sbjct:  143 MEYQNKRGGRVKLQSILMPVSEFDHEEKGDALHAMELALSLEKLTNEKLLKLQSVGVKNNDVQLVDFVESEFLGEQVEAIKKISEYVAQLRRIGKGHGVWHFDQMLLNDE 252

HSP 2 Score: 58.151 bits (139), Expect = 3.632e-48
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKG 86
            QINVEYNVSYVYHA++AYFDRDNV LKG
Sbjct:   96 QINVEYNVSYVYHALYAYFDRDNVGLKG 123

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI3_ARATH (Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.694e-47
Identity = 71/107 (66.36%), Postives = 83/107 (77.57%), Query Frame = 1

Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLL 465
            MEYQNKRGG+VKLQ +++P SEFDH EKGDALYAME                H  A+KN+DVQLADF+ES +L+EQVEAIKKISEYV+QLRR+G+GHG WHFDQ LL
Sbjct:  149 MEYQNKRGGRVKLQPMVLPQSEFDHPEKGDALYAMELALSLEKLVNEKLLNLHSVASKNDDVQLADFIESVFLNEQVEAIKKISEYVSQLRRLGKGHGTWHFDQELL 255

HSP 2 Score: 61.2326 bits (147), Expect = 6.694e-47
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYHA++AYFDRDNVALKGL
Sbjct:  102 QINVEYNVSYVYHALYAYFDRDNVALKGL 130

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI1_ARATH (Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.137e-46
Identity = 70/124 (56.45%), Postives = 88/124 (70.97%), Query Frame = 1

Query:   97 FSRNQVKRKESMLRNSMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 468
            F +   + +       MEYQN+RGG+VKL  I+ P+SEF+HAEKGDALYAME                HK A++NND QLADFVES++L EQ+EAIKKIS+Y+ QLR +G+GHGVWHFDQMLL+
Sbjct:  132 FFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGEQIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255

HSP 2 Score: 60.4622 bits (145), Expect = 1.137e-46
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYH+M+AYFDRDNVA+KGL
Sbjct:  101 QINVEYNVSYVYHSMYAYFDRDNVAMKGL 129

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI1_TOBAC (Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=FER1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.095e-45
Identity = 71/108 (65.74%), Postives = 82/108 (75.93%), Query Frame = 1

Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 468
            ME+QNKRGG+VKL SI  P +EFDH EKGDALYAME                H  A+++NDV LADF+ES++L EQV+AIKKISEYVAQLRRVGQGHGVW FDQMLL+
Sbjct:  139 MEFQNKRGGRVKLLSICAPPTEFDHCEKGDALYAMELALCLEKLTNQRLLNLHAVASRSNDVHLADFLESEFLVEQVDAIKKISEYVAQLRRVGQGHGVWQFDQMLLN 246

HSP 2 Score: 60.8474 bits (146), Expect = 2.095e-45
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYN SYVYHAMFAYFDRDNVALKGL
Sbjct:   92 QINVEYNNSYVYHAMFAYFDRDNVALKGL 120

[Close]

BLAST of CK739679 vs. ExPASy Swiss-Prot
Match: FRI1_BRANA (Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.637e-45
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1

Query:  145 MEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMEXXXXXXXXXXXXXXXXHKGANKNNDVQLADFVESKYLHEQVEAIKKISEYVAQLRRVGQGHGVWHFDQMLLH 468
            MEYQN+RGG+V L  I+ P+S+F+HAEKGDALYAME                H+ A++NND QLADFVES++L EQ+EAIKKIS+++ QLR VG+GHGVWHFDQMLL+
Sbjct:  147 MEYQNQRGGRVTLHPIVSPISDFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIKKISDFITQLRMVGKGHGVWHFDQMLLN 254

HSP 2 Score: 61.2326 bits (147), Expect = 4.637e-45
Identity = 27/29 (93.10%), Postives = 29/29 (100.00%), Query Frame = 3

Query:    3 QINVEYNVSYVYHAMFAYFDRDNVALKGL 89
            QINVEYNVSYVYH+M+AYFDRDNVALKGL
Sbjct:  100 QINVEYNVSYVYHSMYAYFDRDNVALKGL 128

The following BLAST results are available for this feature:

BLAST of CK739679 vs. ExPASy Swiss-Prot

BLAST of CK739679 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54


Match Name	E-value	Identity	Description
FRI2_TOBAC	1.693e-54	68.46	Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=...	[more]
FRI3_SOYBN	1.693e-54	66.15	Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1	[more]
FRI4_SOYBN	1.669e-51	64.52	Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2	[more]
FRI2_VIGUN	1.067e-50	63.71	Ferritin-2, chloroplastic OS=Vigna unguiculata GN=...	[more]
FRI4_ARATH	9.653e-49	67.89	Ferritin-4, chloroplastic OS=Arabidopsis thaliana ...	[more]
FRI2_ARATH	3.632e-48	70.00	Ferritin-2, chloroplastic OS=Arabidopsis thaliana ...	[more]
FRI3_ARATH	6.694e-47	66.36	Ferritin-3, chloroplastic OS=Arabidopsis thaliana ...	[more]
FRI1_ARATH	1.137e-46	56.45	Ferritin-1, chloroplastic OS=Arabidopsis thaliana ...	[more]
FRI1_TOBAC	2.095e-45	65.74	Ferritin-1, chloroplastic OS=Nicotiana tabacum GN=...	[more]
FRI1_BRANA	4.637e-45	61.11	Ferritin-1, chloroplastic OS=Brassica napus GN=LSC...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE58D03 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK739679 ID=CK739679; Name=CK739679; organism=Citrus sinensis; type=EST; length=530bp
AGCAGATCAATGTGGAATACAATGTCTCCTATGTGTATCATGCCATGTTT
GCTTACTTTGACAGAGACAATGTCGCGCTCAAGGGTCTCGCCAAGTTTTT
CAAGGAATCAAGTGAAGAGGAAAGAGAGCATGCTGAGAAATTCGATGGAA
TATCAGAACAAACGAGGAGGTAAAGTGAAGCTGCAATCAATATTGATGCC
TCTCTCTGAGTTTGATCATGCTGAGAAAGGAGATGCTTTGTATGCCATGG
AGCTTACGCTGTCTCTGGAGAAGCTAACAAATGAGAAACTCCTCAACTTG
CACAAGGGGGCCAACAAGAACAATGATGTGCAGTTGGCAGATTTCGTTGA
AAGCAAGTATTTACACGAGCAGGTAGAAGCCATCAAAAAGATATCTGAAT
ATGTTGCTCAGCTGAGAAGAGTTGGCCAGGGGCATGGTGTCTGGCACTTT
GATCAAATGCTGCTCCATGGGGAGGAAGTTGTCGCATGATGGTGGACACA
TCTTGCTTGTCACCTGACTATCCCTACTAA