CK739810

Overview
NameCK739810
Unique NameCK739810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:532..1061. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.053e-58
Identity = 109/132 (82.58%), Postives = 113/132 (85.61%), Query Frame = 2
Query:    2 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSLKFH 397
            PAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY            KDEKSMK+ KLKE+KNGRLAMLAILGYF+Q LVT VGPYQNLLDHLADPVNNNVLTSLKFH
Sbjct:  142 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 8.918e-58
Identity = 107/132 (81.06%), Postives = 113/132 (85.61%), Query Frame = 2
Query:    2 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSLKFH 397
            PAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  GGSG+PAY            KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVT VGPYQNLLDH+ADPVNNNVLTSLKFH
Sbjct:  144 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 2
Query:    5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVL 379
            AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y    G+  Y              E      K KE+ NGRLAMLA LG+ VQ  VT  GP++NLL HL+DP +N ++
Sbjct:  130 AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = 2
Query:    5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSL 388
            AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +G+  Y              E      K KE+ NGRLAMLA LG+ +Q  VT  GP+ NLL H++DP +N ++ +L
Sbjct:  129 AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14
Identity = 49/135 (36.30%), Postives = 64/135 (47.41%), Query Frame = 2
Query:    5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADP 361
            AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + T  GP  NL  HLADP
Sbjct:  141 AGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.633e-14
Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 2
Query:    5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADP 361
            AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G                GSG PA                  +K+ + KE+KNGRLAMLA++G + Q + T  GP  NL  HLADP
Sbjct:  141 AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  160 IWATQVILMGAVEGYRV---AGEGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:   18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.922e-13
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 2
Query:  149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            Y GGS DP              +D ++  + K+KE+KNGRLAM ++ G+FVQ LVT  GP +NL DHLADPVNNN
Sbjct:  190 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254          
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2
Query:   41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373
            ++  ++ LMG  E  R    A  G +G    L    Y GGS DP               D ++  + K+KE+KNGRLAM ++ G+FVQ +VT  GP +NL DHLADPVNNN
Sbjct:  161 IWATQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
The following BLAST results are available for this feature:
BLAST of CK739810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB13_SOLLC1.053e-5882.58Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA8.918e-5881.06Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB24_ARATH6.465e-1640.80Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.103e-1539.06Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_PETHY2.716e-1436.30Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.633e-1435.56Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB21_SINAL2.300e-1341.44Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA2.300e-1341.44Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB25_NICPL3.922e-1350.67Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_ARATH5.123e-1341.44Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6200 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE59H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739810 ID=CK739810; Name=CK739810; organism=Citrus sinensis; type=EST; length=529bp
CCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACACTTTTCGTCC
TGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTCCAAGACTGG
GCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATTCGAGAAATA
CTTGGGAGGTTCCGGCGATCCGGCTTACCCTGGAGGACCTCTATTCAACC
CTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTCAAGCTCAAG
GAAGTGAAGAATGGAAGATTGGCAATGTTGGCAATCTTGGGTTACTTTGT
TCAAGGGCTTGTTACATGAGTTGGGCCTTACCAGAACCTATTGGATCACT
TGGCTGATCCTGTCAACAACAATGTTTTGACTAGCCTCAAGTTTCACTGA
GAGAGAAATTTCTTGGTCATTGCTTGGAATTATATATTCCAAGCCTTGTC
ATCCCCCACTCTGTTCTATTCTACTTTCCCATTGTAAAATTATCTATGTG
AAAAGTGAATGTAACTTGGGCGGAAATGA
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