CK739810
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 225.713 bits (574), Expect = 1.053e-58 Identity = 109/132 (82.58%), Postives = 113/132 (85.61%), Query Frame = 2 Query: 2 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSLKFH 397 PAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LGGSGDPAY KDEKSMK+ KLKE+KNGRLAMLAILGYF+Q LVT VGPYQNLLDHLADPVNNNVLTSLKFH Sbjct: 142 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVLTSLKFH 273
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 8.918e-58 Identity = 107/132 (81.06%), Postives = 113/132 (85.61%), Query Frame = 2 Query: 2 PAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSLKFH 397 PAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK GGSG+PAY KDEKS+K+ KLKEVKNGRLAMLAILGYF+QGLVT VGPYQNLLDH+ADPVNNNVLTSLKFH Sbjct: 144 PAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSLKFH 275
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16 Identity = 51/125 (40.80%), Postives = 68/125 (54.40%), Query Frame = 2 Query: 5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVL 379 AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y G+ Y E K KE+ NGRLAMLA LG+ VQ VT GP++NLL HL+DP +N ++ Sbjct: 130 AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPKGEVGYPGGIFNPLNFAPTQEA-----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIV 247
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15 Identity = 50/128 (39.06%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNNVLTSL 388 AG Y+A TLFV+E L + E RR+QD NPGS+ + F++Y +G+ Y E K KE+ NGRLAMLA LG+ +Q VT GP+ NLL H++DP +N ++ +L Sbjct: 129 AGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQYSLPAGEVGYPGGIFNPLNFAPTLEA-----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 249
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 2.716e-14 Identity = 49/135 (36.30%), Postives = 64/135 (47.41%), Query Frame = 2 Query: 5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADP 361 AG Y+ D TLFV+E+ L+G+AE RR+ D PG + K G GSG PA +K+ + KE+KNGRLAMLA++G + Q + T GP NL HLADP Sbjct: 141 AGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.633e-14 Identity = 48/135 (35.56%), Postives = 64/135 (47.41%), Query Frame = 2 Query: 5 AGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLG----------------GSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADP 361 AG Y+ D TLF++E+ L+G+AE RR+ D PG + K G GSG PA +K+ + KE+KNGRLAMLA++G + Q + T GP NL HLADP Sbjct: 141 AGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPA-----------------KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13 Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2 Query: 41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373 ++ ++ LMG E R A G +G L Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VT GP +NL DHLADPVNNN Sbjct: 160 IWATQVILMGAVEGYRV---AGEGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.300e-13 Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2 Query: 41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373 ++ ++ LMG E R A G +G L Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VT GP +NL DHLADPVNNN Sbjct: 18 IWATQVILMGAVEGYRV---AGDGPLGEAEDL---LYPGGSFDPL----------ASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.922e-13 Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 2 Query: 149 YLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373 Y GGS DP +D ++ + K+KE+KNGRLAM ++ G+FVQ LVT GP +NL DHLADPVNNN Sbjct: 190 YPGGSFDPL----------GLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
BLAST of CK739810 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 5.123e-13 Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 2 Query: 41 LFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLAILGYFVQGLVT*VGPYQNLLDHLADPVNNN 373 ++ ++ LMG E R A G +G L Y GGS DP D ++ + K+KE+KNGRLAM ++ G+FVQ +VT GP +NL DHLADPVNNN Sbjct: 161 IWATQVILMGAVEGYRV---AGNGPLGEAEDL---LYPGGSFDPL----------GLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255 The following BLAST results are available for this feature:
BLAST of CK739810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 68
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Sequences
The
following sequences are available for this feature:
EST sequence >CK739810 ID=CK739810; Name=CK739810; organism=Citrus sinensis; type=EST; length=529bpback to top |