CK739823

Overview
NameCK739823
Unique NameCK739823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13803 contig Csv1_Contig13803:19..319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.587e-19
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            P T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSI 83          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 39/64 (60.94%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASV 84          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.677e-18
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  108 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSI 82          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 38/63 (60.32%), Postives = 52/63 (82.54%), Query Frame = 3
Query:  108 VTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSV 82          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/60 (68.33%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIR 299
            ITCGQV++SLAPCI +LR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIK 59          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.162e-17
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            ITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASV 58          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 2.050e-16
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 3
Query:  120 ITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            ITCGQV++SLAPCI ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+I
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSI 58          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.566e-16
Identity = 34/64 (53.12%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  105 PVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASV 84          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.329e-15
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  114 NAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            +AITCG+V  +LAPC+ +L+ GG  P   CC GVR+LN AA TTPDRQAACNCLK A G+I
Sbjct:   23 SAITCGRVDTALAPCLGYLQ-GGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSI 82          
BLAST of CK739823 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.735e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query:  117 AITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTI 296
            AI+CG VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A G+I
Sbjct:   26 AISCGAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 84          
The following BLAST results are available for this feature:
BLAST of CK739823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
NLTP_HELAN2.587e-1967.19Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU7.527e-1960.94Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO1.677e-1865.08Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PYRCO6.372e-1860.32Non-specific lipid-transfer protein OS=Pyrus commu... [more]
LTP1_MORNI2.421e-1768.33Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE3.162e-1762.71Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR2.050e-1662.71Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV4.566e-1653.13Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_CICAR1.329e-1563.93Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP6_LENCU1.735e-1563.33Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6213 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739823 ID=CK739823; Name=CK739823; organism=Citrus sinensis; type=EST; length=301bp
GAACCTGATAACTAGCTATAACCAAGCAAAAGCCTCCCTGAAGAATCCTC
ATGGCTGCTCTTAAGCTTGTTTGTGCTTTGCTTTTGTGCATTCTGGTGAC
TGCCCCGGTGACTAATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGG
CTCCATGCATCCCTTTCTTGAGAACTGGAGGGCGTTTTCCTCCACCGCCA
TGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGA
CCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACGGAACAATCCGCG
G
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