CK739828

Overview
NameCK739828
Unique NameCK739828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length515
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_ARATH (Mitochondrial import inner membrane translocase subunit Tim10 OS=Arabidopsis thaliana GN=TIM10 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.514e-35
Identity = 70/84 (83.33%), Postives = 78/84 (92.86%), Query Frame = 2
Query:  110 MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGRPPM 361
            MA+  P+GV KEQAF MA+TEMEYRVELFN+LAQTCFNKCVDKRYKE+ELNMGENSCIDRCVSKYWQVN M+GQLLSA G+PP+
Sbjct:    1 MASPIPVGVTKEQAFSMAQTEMEYRVELFNKLAQTCFNKCVDKRYKEAELNMGENSCIDRCVSKYWQVNGMVGQLLSA-GKPPV 83          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_SCHPO (Mitochondrial import inner membrane translocase subunit tim10 OS=Schizosaccharomyces pombe GN=tim10 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.379e-12
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 2
Query:  146 QAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 352
            Q   MAE E+E   ++FNRL  TC  KC+  +Y E++L  GE+ CIDRCVSKY++ N  + Q +   G+
Sbjct:   16 QNIAMAEQEVEMMSDIFNRLVMTCHKKCISPKYYEADLTKGESVCIDRCVSKYFEANQSLSQHMQKRGQ 84          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_EMENI (Mitochondrial import inner membrane translocase subunit tim10 OS=Emericella nidulans GN=tim10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.073e-12
Identity = 28/66 (42.42%), Postives = 45/66 (68.18%), Query Frame = 2
Query:  134 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 331
            +  EQ    AETE+E   ++FNRL+++C  KC+   Y+E +LN GE+ C+DRCV K+++VN  + +
Sbjct:   11 MSSEQKIAAAETEVEMITDMFNRLSESCSKKCIPNDYREGDLNKGESVCLDRCVGKFFEVNIKVSE 76          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_YEAST (Mitochondrial import inner membrane translocase subunit TIM10 OS=Saccharomyces cerevisiae GN=MRS11 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 27/73 (36.99%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  134 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 352
            +  +Q    AE E++   ++FN+L   C+ KC++  Y E ELN  E+SC+DRCV+KY++ N  +G+ +   G+
Sbjct:   13 LSSQQKIQAAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQ 85          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_YARLI (Mitochondrial import inner membrane translocase subunit TIM10 OS=Yarrowia lipolytica GN=TIM10 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.013e-12
Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  110 MAANNPMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAG 346
            +   NP G    Q    AE E++   ++FNRL ++C  KC+   Y   +LN  E  C+DRCV+KY+ VN+ +G++   G
Sbjct:    6 LGGQNPNGPSNPQKLLAAEAELDMVTDMFNRLVESCHEKCIKADYSSGDLNANEGLCLDRCVAKYFDVNTKVGEVSMRG 84          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_ASHGO (Mitochondrial import inner membrane translocase subunit TIM10 OS=Ashbya gossypii GN=TIM10 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.168e-11
Identity = 26/73 (35.62%), Postives = 45/73 (61.64%), Query Frame = 2
Query:  134 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 352
            +  +Q    AE E++   ++FN+L   C  KC+D  Y E +LN  E++C+DRCV+KY++ N  +G+ +   G+
Sbjct:   10 LSSQQKIAAAEAELDLVTDMFNKLVSNCHRKCIDMNYNEGDLNKNESNCLDRCVAKYFETNVKVGENMQQLGQ 82          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_ASPFU (Mitochondrial import inner membrane translocase subunit tim10 OS=Aspergillus fumigatus GN=tim10 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 28/69 (40.58%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  125 PMGVDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQ 331
            P  +   +    AETE+E   ++FNRL ++C  KC+   Y+E +LN GE+ C+DRCVSK+++VN  + +
Sbjct:    8 PPKMSSAEKIAAAETEVEMVSDMFNRLTESCQKKCIPNDYREGDLNKGESVCLDRCVSKFFEVNIKVSE 76          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_DROME (Mitochondrial import inner membrane translocase subunit Tim10 OS=Drosophila melanogaster GN=Tim10 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.601e-11
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 2
Query:  158 MAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSA 343
            M E E+E   +L+NR+   C  KC+  RY ESEL  GE  CIDRCV+KY  ++  IG+ L+A
Sbjct:   17 MQEMEIEMMSDLYNRMTNACHKKCIPPRYSESELGKGEMVCIDRCVAKYLDIHEKIGKKLTA 78          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_KLULA (Mitochondrial import inner membrane translocase subunit TIM10 OS=Kluyveromyces lactis GN=TIM10 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.795e-11
Identity = 25/73 (34.25%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  134 VDKEQAFGMAETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLSAGGR 352
            +  +Q    AE E++   ++FN+L   C  KC+++ Y + +LN  E++CIDRCV+KY++ N  +G+ +   G+
Sbjct:   10 LSSQQKLSAAEAELDLVTDMFNKLVDNCHKKCIEQIYNDGQLNKNESTCIDRCVAKYFETNVKVGENMQQLGQ 82          
BLAST of CK739828 vs. ExPASy Swiss-Prot
Match: TIM10_RAT (Mitochondrial import inner membrane translocase subunit Tim10 OS=Rattus norvegicus GN=Timm10 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.568e-11
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  161 AETEMEYRVELFNRLAQTCFNKCVDKRYKESELNMGENSCIDRCVSKYWQVNSMIGQLLS 340
            AE E+E   +++NR+   C  KCV   YKE+EL+ GE+ C+DRCVSKY  ++  +G+ L+
Sbjct:   11 AELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLT 70          
The following BLAST results are available for this feature:
BLAST of CK739828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TIM10_ARATH1.514e-3583.33Mitochondrial import inner membrane translocase su... [more]
TIM10_SCHPO1.379e-1244.93Mitochondrial import inner membrane translocase su... [more]
TIM10_EMENI3.073e-1242.42Mitochondrial import inner membrane translocase su... [more]
TIM10_YEAST4.013e-1236.99Mitochondrial import inner membrane translocase su... [more]
TIM10_YARLI4.013e-1236.71Mitochondrial import inner membrane translocase su... [more]
TIM10_ASHGO1.168e-1135.62Mitochondrial import inner membrane translocase su... [more]
TIM10_ASPFU1.525e-1140.58Mitochondrial import inner membrane translocase su... [more]
TIM10_DROME2.601e-1148.39Mitochondrial import inner membrane translocase su... [more]
TIM10_KLULA5.795e-1134.25Mitochondrial import inner membrane translocase su... [more]
TIM10_RAT7.568e-1145.00Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6218 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739828 ID=CK739828; Name=CK739828; organism=Citrus sinensis; type=EST; length=515bp
CTCGTATATATTGAAACTAAAACTAGGGATTTTCTCTCTGCTTCATCTTG
TGATCCGATTTACGAACCTAATTGACGGTACCCCAATAGTTAATTTCTCA
AAAGTTGTAATGGCTGCCAATAATCCAATGGGTGTCGATAAAGAACAAGC
ATTTGGTATGGCGGAAACAGAAATGGAGTACAGGGTAGAATTGTTTAACA
GGCTCGCCCAGACATGTTTTAATAAGTGTGTCGACAAAAGGTACAAAGAA
TCCGAGCTAAATATGGGTGAAAATAGTTGCATTGATCGTTGTGTTTCAAA
GTATTGGCAGGTTAATAGTATGATTGGCCAGCTGCTCAGTGCCGGTGGCC
GGCCTCCCATGTAAAATTTAGGGATTCTCCAGTTTGAAGTTTGTTTGAAC
CTCAGCATACCAGGCCTGCTGTTAGTCGAAAGTGGAGACTGATGTTGATC
TTGGGATTGTTTCTATGCGTCTTGTATCGATAATTTCTAGTCTTCTGATC
TAAACAAAGGAATCA
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