CK739834

Overview
NameCK739834
Unique NameCK739834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length229
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:313..539. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.409e-31
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEARVVQGG 184
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA   +GG
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKGG 136

HSP 2 Score: 28.1054 bits (61), Expect = 3.409e-31
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFK G+QIFS+G    LG
Sbjct:  131 VWFKGGSQIFSQGGLDYLG 149

HSP 3 Score: 23.0978 bits (48), Expect = 3.409e-31
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            ++GGLDYLGN
Sbjct:  141 SQGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 129

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  130 VWFKAGSQIFSEGGLDYLG 148

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  140 SEGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   76 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 130

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  131 VWFKAGSQIFSEGGLDYLG 149

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  141 SEGGLDYLGN 150
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.409e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   75 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 129

HSP 2 Score: 29.261 bits (64), Expect = 3.409e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  130 VWFKAGSQIFSEGGLDYLG 148

HSP 3 Score: 24.2534 bits (51), Expect = 3.409e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  140 SEGGLDYLGN 149
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.410e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 3.410e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 3.410e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
[Close]
BLAST of CK739834 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.410e-31
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 166
            PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA
Sbjct:   74 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA 128

HSP 2 Score: 29.261 bits (64), Expect = 3.410e-31
Identity = 13/19 (68.42%), Postives = 14/19 (73.68%), Query Frame = 3 
Query:  168 VWFKAGAQIFSRGRA*LLG 224
            VWFKAG+QIFS G    LG
Sbjct:  129 VWFKAGSQIFSEGGLDYLG 147

HSP 3 Score: 24.2534 bits (51), Expect = 3.410e-31
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 1 
Query:  199 AEGGLDYLGN 228
            +EGGLDYLGN
Sbjct:  139 SEGGLDYLGN 148
The following BLAST results are available for this feature:
BLAST of CK739834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CB23_NICPL3.409e-3193.44Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB2G_SOLLC3.409e-31100.00Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB2A_SPIOL3.409e-31100.00Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC3.409e-31100.00Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC3.409e-31100.00Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB25_NICPL3.409e-31100.00Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB24_TOBAC3.409e-31100.00Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC3.409e-31100.00Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2B_SOLLC3.410e-31100.00Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_TOBAC3.410e-31100.00Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6224 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739834 ID=CK739834; Name=CK739834; organism=Citrus sinensis; type=EST; length=229bp
CCCTGGTGACTACGGTTGGGACACTGCTGGGCTTTCAGCTGACCCAGAAA
CCTTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATG
TTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGT
CAAGTTCGGTGAGGCCCGTGTGGTTCAAGGCGGGGGCCCAGATCTTCAGC
CGAGGGCGGGCTTGACTACTTGGGGAACC
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