CK739835

Overview
NameCK739835
Unique NameCK739835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9901 contig Csv1_Contig9901:63..326. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739835 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.662e-28
Identity = 54/64 (84.38%), Postives = 60/64 (93.75%), Query Frame = 1
Query:   34 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFE 225
            M+SS APSRK LSKIA+NRLQKELVEWQ+NPP GFKHKVTDNLQRWIIEV GAPGTLYAN+T++
Sbjct:    1 MSSSGAPSRKTLSKIATNRLQKELVEWQMNPPTGFKHKVTDNLQRWIIEVIGAPGTLYANDTYQ 64          

HSP 2 Score: 26.9498 bits (58), Expect = 4.662e-28
Identity = 9/11 (81.82%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  231 KLDFPEHYPME 263
            ++DFPEHYPME
Sbjct:   66 QVDFPEHYPME 76          
BLAST of CK739835 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.270e-27
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1
Query:   34 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETF 222
            MTSSS+PSRKALSKIA NRLQKEL EWQVNPP GFKH+VTDNLQ+W+IEV GAPGTLYANET+
Sbjct:    1 MTSSSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQKWVIEVTGAPGTLYANETY 63          

HSP 2 Score: 24.2534 bits (51), Expect = 2.270e-27
Identity = 7/11 (63.64%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  231 KLDFPEHYPME 263
            +++FP+HYPME
Sbjct:   66 QVEFPQHYPME 76          
BLAST of CK739835 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.847e-27
Identity = 53/64 (82.81%), Postives = 59/64 (92.19%), Query Frame = 1
Query:   34 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFE 225
            MTSSSAPSRKALSKIA NRLQKEL EWQ+NPP GF+HKVTDNLQ+W I+V GAPGTLYANET++
Sbjct:    1 MTSSSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQKWTIDVTGAPGTLYANETYQ 64          

HSP 2 Score: 25.409 bits (54), Expect = 3.847e-27
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  231 KLDFPEHYPME 263
            +++FPEHYPME
Sbjct:   66 QVEFPEHYPME 76          
BLAST of CK739835 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.427e-25
Identity = 48/64 (75.00%), Postives = 58/64 (90.62%), Query Frame = 1
Query:   34 MTSSSAPSRKALSKIASNRLQKELVEWQVNPPAGFKHKVTDNLQRWIIEVNGAPGTLYANETFE 225
            MTSSS  +RK L+KIA+NRLQKE +EWQ NPP+GFKH+V+DNLQRWIIEV+G PGTLYANET++
Sbjct:    1 MTSSSESTRKGLTKIATNRLQKEFMEWQTNPPSGFKHRVSDNLQRWIIEVHGVPGTLYANETYQ 64          

HSP 2 Score: 25.409 bits (54), Expect = 4.427e-25
Identity = 8/11 (72.73%), Postives = 11/11 (100.00%), Query Frame = 3
Query:  231 KLDFPEHYPME 263
            +++FPEHYPME
Sbjct:   66 QVEFPEHYPME 76          
The following BLAST results are available for this feature:
BLAST of CK739835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UBC16_ARATH4.662e-2884.38Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC18_ARATH2.270e-2785.71Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH3.847e-2782.81Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC17_ARATH4.427e-2575.00Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6225 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE60E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739835 ID=CK739835; Name=CK739835; organism=Citrus sinensis; type=EST; length=264bp
TCCAGACGGTGCCGTTCTCTTCTCGTGGAAGCCATGACCAGCTCATCTGC
TCCTTCACGAAAGGCTTTAAGCAAGATCGCAAGTAATAGACTGCAAAAAG
AGCTTGTGGAGTGGCAAGTCAATCCTCCAGCGGGATTCAAACACAAAGTC
ACTGATAATCTGCAAAGGTGGATAATCGAAGTCAACGGAGCGCCGGGGAC
GCTCTATGCGAACGAAACGTTTGAGCCTTCAAGTTGGATTTCCCTGAGCA
TTACCCTATGGAGG
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