CK739852

Overview
NameCK739852
Unique NameCK739852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6277 contig Csv1_Contig6277:42..533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 4.984e-25
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   76 FTD*SFQRSVIHINS*TQALTLIQSIEIWRIAKLLHDTVKEGGI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            F + SF   +++ N     L++  S ++  I   L D V  G   S   +   +  + PP  +ASG    +   M         YRGVR+RPWGKFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNF
Sbjct:   17 FRNPSFSNVILNDNWSDLPLSVDDSQDM-AIYNTLRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  322 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNF
Sbjct:   98 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 155          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  322 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNF
Sbjct:  102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNF 159          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 44/58 (75.86%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  322 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AA+AYD+AA++MRGSKA LNF
Sbjct:  104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNF 161          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 7.447e-21
Identity = 45/58 (77.59%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  322 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNF
Sbjct:  147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 204          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.167e-20
Identity = 47/72 (65.28%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  280 QKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +KA  +T       +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYD AAF+MRGS+A LNF
Sbjct:  102 KKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNF 173          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.827e-20
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  211 FDQLDGKSTPHAPPQAQASGFR------LQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            F Q++G+S+  + P+  +S         ++KA     E+  R +YRGVR+RPWGKFAAEIRD  K GSR+WLGT+++   AA AYD AAFK+RG KA LNF
Sbjct:   67 FLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDAR-HYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNF 166          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 42/57 (73.68%), Postives = 52/57 (91.23%), Query Frame = 1
Query:  325 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            YRGVR+RPWGK+AAEIRD  ++G+R+WLGT++T E AALAYDRAAF+MRG+KA LNF
Sbjct:   59 YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNF 115          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.405e-19
Identity = 43/58 (74.14%), Postives = 52/58 (89.66%), Query Frame = 1
Query:  322 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY++ E AALAY +AAF+MRG+KA LNF
Sbjct:  106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNF 163          
BLAST of CK739852 vs. ExPASy Swiss-Prot
Match: ERF94_ARATH (Ethylene-responsive transcription factor ERF094 OS=Arabidopsis thaliana GN=ERF094 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.337e-19
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1
Query:  283 KAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 495
            K AT+  E   + +YRGVRKRPWGKFAAEIRD  + G R+WLGT+DT E AALAYD+AAF ++GS A LNF
Sbjct:   69 KEATVAAEEEEK-SYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNF 138          
The following BLAST results are available for this feature:
BLAST of CK739852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
ERF99_ARATH4.984e-2546.81Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF2_TOBAC7.447e-2177.59Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY7.447e-2177.59Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF1_TOBAC7.447e-2175.86Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF100_ARATH7.447e-2177.59Ethylene-responsive transcription factor 1A OS=Ara... [more]
EF101_ARATH2.167e-2065.28Ethylene-responsive transcription factor 2 OS=Arab... [more]
EF106_ARATH4.827e-2050.50Ethylene-responsive transcription factor ERF106 OS... [more]
PTI5_SOLLC1.405e-1973.68Pathogenesis-related genes transcriptional activat... [more]
ERF1_SOLLC1.405e-1974.14Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF94_ARATH5.337e-1964.79Ethylene-responsive transcription factor ERF094 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6242 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739852 ID=CK739852; Name=CK739852; organism=Citrus sinensis; type=EST; length=496bp
CTCAAATCCAAGAAAACACAGCAAAATCATAACATCATATTCCCCGGGCA
AATTAAATTCAAGCTTAACTTTTCGTTTACAGATTAAAGTTTTCAGCGTT
CAGTGATACACATAAACTCTTGAACTCAAGCCCTAACTCTGATTCAATCC
ATTGAAATATGGAGGATTGCGAAGCTTTTACACGACACTGTTAAGGAGGG
GGGGATTTCGTTTGATCAGCTTGATGGAAAGTCGACGCCTCATGCTCCGC
CTCAGGCTCAGGCTAGTGGATTTCGTTTACAGAAGGCAGCCACGATGACA
CGTGAGATTCACGTGCGTGTAAATTATCGAGGTGTGAGGAAAAGGCCGTG
GGGAAAGTTTGCTGCGGAGATAAGGGATCGTAAAAAGAATGGCTCACGAC
TTTGGCTGGGGACCTATGATACCCCTGAGGGTGCTGCGTTGGCTTATGAT
AGAGCCGCTTTCAAGATGCGCGGCTCAAAAGCCAAGCTTAATTTTC
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