CK739905

Overview
NameCK739905
Unique NameCK739905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length346
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:744..1088. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.872e-53
Identity = 71/75 (94.67%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENP  P
Sbjct:  205 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279

HSP 2 Score: 79.7221 bits (195), Expect = 8.872e-53
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  284 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 318
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.879e-53
Identity = 71/75 (94.67%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENP  P
Sbjct:  205 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279

HSP 2 Score: 79.7221 bits (195), Expect = 8.879e-53
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  284 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 318
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.675e-52
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADIIKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP  P
Sbjct:  196 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 270

HSP 2 Score: 78.1814 bits (191), Expect = 5.675e-52
Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKG
Sbjct:  275 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKG 309
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.257e-51
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN   P
Sbjct:  205 LIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVP 279

HSP 2 Score: 79.7221 bits (195), Expect = 1.257e-51
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  284 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 318
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.786e-51
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADII KGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNKEENP  P
Sbjct:  192 LIRQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVP 266

HSP 2 Score: 79.7221 bits (195), Expect = 2.786e-51
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  271 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 305
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.787e-51
Identity = 70/75 (93.33%), Postives = 71/75 (94.67%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADIIKKGKMCCL INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENP  P
Sbjct:  202 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 276

HSP 2 Score: 75.8702 bits (185), Expect = 2.787e-51
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C G
Sbjct:  281 GNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTG 315
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 1.048e-50
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREA+D+IKKGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NP  P
Sbjct:  201 LIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVP 275

HSP 2 Score: 79.7221 bits (195), Expect = 1.048e-50
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  280 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 314
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.366e-50
Identity = 68/75 (90.67%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAAD+IKKGKMCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENP  P
Sbjct:  195 LIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVP 269

HSP 2 Score: 78.5666 bits (192), Expect = 1.366e-50
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKG
Sbjct:  274 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKG 308
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.942e-50
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAA+II+KG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN   P
Sbjct:  204 LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP 278

HSP 2 Score: 79.7221 bits (195), Expect = 3.942e-50
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG
Sbjct:  283 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 317
[Close]
BLAST of CK739905 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.944e-50
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 3 
Query:    3 LIRQRYREAADIIKKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPPCP 227
            LIRQRYREAADII+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEENP  P
Sbjct:  205 LIRQRYREAADIIRKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVP 279

HSP 2 Score: 76.6406 bits (187), Expect = 3.944e-50
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:  241 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKG 345
            GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC G
Sbjct:  284 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCIG 318
The following BLAST results are available for this feature:
BLAST of CK739905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA1_LARTR8.872e-5394.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR8.879e-5394.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ5.675e-5293.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.257e-5192.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.786e-5192.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.787e-5193.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.048e-5089.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.366e-5090.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.942e-5088.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.944e-5090.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6297 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739905 ID=CK739905; Name=CK739905; organism=Citrus sinensis; type=EST; length=346bp
AGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTATCAAGAAGGGA
AAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAGCTGGTCGTAT
GGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTTAACGCCACAC
TCATGAACATTGCTGATAACCCAACTTGTGTCCAACTCCCTGGTATGTAC
AACAAGGAGGAGAACCCCCCGTGTCCCAATCATAGTCACCGGTAATGACT
TCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAAATTC
TACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTA
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