CK739919

Overview
NameCK739919
Unique NameCK739919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:331..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_ARATH (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 1.814e-72
Identity = 122/146 (83.56%), Postives = 133/146 (91.10%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWWA 436
            LVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPLSLALAHA+I E GK +FVPW ETDFRTG+APWW+
Sbjct:   84 LVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPLSLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIB_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.421e-71
Identity = 121/145 (83.45%), Postives = 133/145 (91.72%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            LVPYATFFAPPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYN QGRVVRGPAPLSLALAHA+I++GK VFVPW ETDFRTGEAPWWA
Sbjct:   84 LVPYATFFAPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEAPWWA 228          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_SPIOL (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 9.953e-71
Identity = 118/145 (81.38%), Postives = 134/145 (92.41%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            L+PYA+FF PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGCVVP+N+AENKFICPCHGSQYN QGRVVRGPAPLSLALAH ++++GK VFVPWTETDFRTGEAPWW+
Sbjct:   85 LLPYASFFVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS 229          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_TOBAC (Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 1.437e-69
Identity = 118/145 (81.38%), Postives = 130/145 (89.66%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            LVPY TFF PPG G   GGT AKDA+GND+IA++WL TH PG+RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVP+N+AENKFICPCHGSQYN QGRVVRGPAPLSLALAHA+I++GK VFVPW ETDFRTGE PWWA
Sbjct:   84 LVPYGTFFVPPGSGGGSGGTPAKDALGNDVIASEWLKTHPPGNRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGEDPWWA 228          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_SOLTU (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.452e-69
Identity = 116/145 (80.00%), Postives = 128/145 (88.28%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            LVPYATFFAPPG G    GT AKDA GND++  +WL TH PG RTLT+GLKGDPTYLVVE D TLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYN QG+VVRGPAPLSLALAHA+I++GK VFVPW ETDFRTG++PWWA
Sbjct:   86 LVPYATFFAPPGSGGGSSGTIAKDANGNDVVVTEWLKTHSPGTRTLTQGLKGDPTYLVVENDGTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGKVVRGPAPLSLALAHADIDDGKVVFVPWVETDFRTGDSPWWA 230          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_ORYSJ (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 5.461e-69
Identity = 114/145 (78.62%), Postives = 128/145 (88.28%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWWA 436
            LVPY  FF P G G+AGGG  AKD +GND++A +WL THGP DRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQYN QGRVVRGPAPLSLAL HA++++GK +FVPW ETDFRTG+ PWWA
Sbjct:   81 LVPYGAFFIPAGSGNAGGGQVAKDKLGNDVLAEEWLKTHGPNDRTLTQGLKGDPTYLVVEADKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALVHADVDDGKVLFVPWVETDFRTGDNPWWA 225          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_PEA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.757e-67
Identity = 114/147 (77.55%), Postives = 130/147 (88.44%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHAN--IENGKGVFVPWTETDFRTGEAPWWA 436
            LVPY +F  PPG GS+ GGT AKDA+GND++A +WL TH PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQYN QGRVVRGPAPLSLALAH +  +E+GK VFVPW ETDFRTG+APWW+
Sbjct:   84 LVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKTHAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQYNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_FRIAG (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.112e-67
Identity = 112/146 (76.71%), Postives = 125/146 (85.62%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWWA 436
            L+PY  FF PP  G  GGG  AKDA+GNDI+AA WL THGPGDRTL +GL+GDPTYLVVE D++LA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QG+VVRGPAPLSLAL+H +I E GK VFVPW ETDFRTGE PWW+
Sbjct:   85 LIPYGAFFVPPSSGGGGGGIVAKDAVGNDIVAAAWLKTHGPGDRTLAQGLRGDPTYLVVENDRSLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNNQGKVVRGPAPLSLALSHCDISEEGKVVFVPWVETDFRTGENPWWS 230          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRIA_WHEAT (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.487e-66
Identity = 110/144 (76.39%), Postives = 123/144 (85.42%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANIENGKGVFVPWTETDFRTGEAPWW 433
            LVPY +F  P G GS  GG  AKD +GNDI+  DWL THGP DRTL +GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKF+CPCHGSQYN QG+VVRGPAPLSLAL HA++++GK VFVPW ETDFRTG+ PWW
Sbjct:   78 LVPYGSFLVPAGSGSNAGGVAAKDKLGNDILVEDWLKTHGPNDRTLAQGLKGDPTYLVVESDKTLATYGINAVCTHLGCVVPWNAAENKFLCPCHGSQYNNQGKVVRGPAPLSLALVHADVDDGKVVFVPWVETDFRTGDNPWW 221          
BLAST of CK739919 vs. ExPASy Swiss-Prot
Match: UCRI_MICAN (Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.457e-61
Identity = 104/146 (71.23%), Postives = 122/146 (83.56%), Query Frame = 2
Query:    2 LVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNYQGRVVRGPAPLSLALAHANI-ENGKGVFVPWTETDFRTGEAPWWA 436
            L P   +F PP  G  GGG TAKDA+GND+I + +L +H  GDRTL +GLKGDPTYLVV++DKTLA+YGINAVCTHLGCVVPWN++E KF+CPCHGSQYN +G+VVRGPAPLSLALAHAN+ +N K VF  WTETDFRTGE PWW+
Sbjct:   34 LYPIVKYFIPPSAGGTGGGVTAKDALGNDVIVSQFLTSHNAGDRTLAQGLKGDPTYLVVQEDKTLANYGINAVCTHLGCVVPWNASEEKFMCPCHGSQYNAEGKVVRGPAPLSLALAHANVTDNDKVVFSTWTETDFRTGEEPWWS 179          
The following BLAST results are available for this feature:
BLAST of CK739919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIA_ARATH1.814e-7283.56Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIB_TOBAC3.421e-7183.45Cytochrome b6-f complex iron-sulfur subunit 2, chl... [more]
UCRIA_SPIOL9.953e-7181.38Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_TOBAC1.437e-6981.38Cytochrome b6-f complex iron-sulfur subunit 1, chl... [more]
UCRIA_SOLTU2.452e-6980.00Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_ORYSJ5.461e-6978.62Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_PEA1.757e-6777.55Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_FRIAG5.112e-6776.71Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRIA_WHEAT1.487e-6676.39Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_MICAN2.457e-6171.23Cytochrome b6-f complex iron-sulfur subunit OS=Mic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6311 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739919 ID=CK739919; Name=CK739919; organism=Citrus sinensis; type=EST; length=627bp
GTTGGTTCCTTATGCGACCTTCTTTGCCCCACCTGGTTTAGGAAGTGCTG
GTGGTGGTACTACTGCCAAGGATGCCATTGGCAATGACATCATTGCCGCT
GATTGGCTTAACACGCACGGCCCTGGGGACCGAACCCTCACCGAAGGATT
GAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAGACAAAACACTTGCAT
CATATGGAATCAATGCTGTCTGCACTCACCTTGGATGTGTGGTGCCATGG
AATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCACGGATCCCAATACAA
CTACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCATTGTCATTGGCATTGG
CTCATGCCAACATTGAAAATGGTAAGGGAGTCTTCGTTCCATGGACGGAA
ACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGCTTAAACTTGTTCCGG
TGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTCGGTTTGCTTTGCCGT
ACTGCATAAACATACTGTAACGGAACATGCTTTATCAGAATGAAGCTTAC
AACATGTAAAGCTACTTGGCTTGAATCATGCTATCTTGAATCTTGGCAAT
CTTGACAATTTTCTCTTATCCATTCAT
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