CK739921

Overview
NameCK739921
Unique NameCK739921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length306
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:415..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.113e-14
Identity = 36/40 (90.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS++SFLDDDQ+ EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:   56 VDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.113e-14
Identity = 35/40 (87.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDD+Q+GEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:  108 VDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.229e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+ EGFVLTCAAYPTSDVTIETH+EE++
Sbjct:   56 VDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   56 VDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ ++LDDDQM EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   56 VDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_DATAR (Ferredoxin OS=Datura arborea PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   56 VDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_ATRBE (Ferredoxin OS=Atropa belladonna PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEELAG 126
            VDQS+ +FLDDDQM +GFVLTC AYP SDVTIETHKEEEL G
Sbjct:   56 VDQSDGNFLDDDQMADGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_SYNP6 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   59 VDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER1_SYNE7 (Ferredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=petF PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.607e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            VDQS+QSFLDDDQ+  GFVLTC AYPTSDVTIETHKEE+L
Sbjct:   59 VDQSDQSFLDDDQIAAGFVLTCVAYPTSDVTIETHKEEDL 98          
BLAST of CK739921 vs. ExPASy Swiss-Prot
Match: FER_HORVU (Ferredoxin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.741e-13
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1
Query:    1 VDQSEQSFLDDDQMGEGFVLTCAAYPTSDVTIETHKEEEL 120
            +DQS+QSFLDDDQM EG+VLTCAAYP SDV IETHKEEEL
Sbjct:   56 IDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of CK739921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FER_BRANA1.113e-1490.00Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER2_ARATH1.113e-1487.50Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER3_RAPSA4.229e-1485.00Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER_DATME1.607e-1380.95Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.607e-1380.95Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_DATAR1.607e-1380.95Ferredoxin OS=Datura arborea PE=1 SV=1[more]
FER_ATRBE1.607e-1380.95Ferredoxin OS=Atropa belladonna PE=1 SV=1[more]
FER1_SYNP61.607e-1385.00Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 271... [more]
FER1_SYNE71.607e-1385.00Ferredoxin-1 OS=Synechococcus elongatus (strain PC... [more]
FER_HORVU2.741e-1385.00Ferredoxin OS=Hordeum vulgare PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE61H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739921 ID=CK739921; Name=CK739921; organism=Citrus sinensis; type=EST; length=306bp
GTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAATGGGAGAAGG
TTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTACTATAGAGA
CTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTTGATATCTCA
TTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTATTTTAATGCT
TTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAATGTGTCTTTA
TTTCTTGGTGCAAAGAAGTTGTAATTGCACCGGCCATGAATGCGCATCGT
ACCTAG
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