CK739960

Overview
NameCK739960
Unique NameCK739960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: MFT_ARATH (Protein MOTHER of FT and TF 1 OS=Arabidopsis thaliana GN=MFT PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.573e-24
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 3
Query:   93 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            MA S++PLVVGRVIGDV+DMF P   M+V++G K + NGCEIKPS + + P V I   +  S  LYTLVM DPDAPSPSEP  REW+
Sbjct:    1 MAASVDPLVVGRVIGDVLDMFIPTANMSVYFGPKHITNGCEIKPSTAVNPPKVNI---SGHSDELYTLVMTDPDAPSPSEPNMREWV 84          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: TFL1_ARATH (Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana GN=TFL1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.433e-19
Identity = 45/85 (52.94%), Postives = 60/85 (70.59%), Query Frame = 3
Query:   99 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            R +EPL++GRV+GDV+D FTP T+M V Y  KQV+NG E+ PS+ + KP V+IH     S   +TLVM+DPD P PS+P  +E L
Sbjct:    7 RVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRS--FFTLVMIDPDVPGPSDPFLKEHL 89          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: TSF_ARATH (Protein TWIN SISTER of FT OS=Arabidopsis thaliana GN=TSF PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  108 EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            +PLVVG V+GDV+D FT    + V YG ++V NG +++PS   +KP V+I        N YTLVMVDPD PSPS P  RE+L
Sbjct:    7 DPLVVGSVVGDVLDPFTRLVSLKVTYGHREVTNGLDLRPSQVLNKPIVEIGGDD--FRNFYTLVMVDPDVPSPSNPHQREYL 86          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: CET4_TOBAC (CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 3
Query:   96 ARSMEPLVVGRVIGDVVDMFTPATEMTVHY-GTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            ++  +PLV+GRVIG+VVD FTP+ +M+V Y  +K V NG E+ PS+   KP V++H     S   +TL+M+DPD P PS+P  RE L
Sbjct:    3 SKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRS--FFTLIMIDPDVPGPSDPYLREHL 87          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: BFT_ARATH (Protein BROTHER of FT and TFL 1 OS=Arabidopsis thaliana GN=BFT PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.512e-16
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 3
Query:   93 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            M+R +EPL+VGRVIGDV++MF P+  M V + +   V+NG E+ PS    KP V+I      S   +TL+M+DPDAPSPS P  RE+L
Sbjct:    1 MSREIEPLIVGRVIGDVLEMFNPSVTMRVTFNSNTIVSNGHELAPSLLLSKPRVEIGGQDLRS--FFTLIMMDPDAPSPSNPYMREYL 86          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: FT_ARATH (Protein FLOWERING LOCUS T OS=Arabidopsis thaliana GN=FT PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 3
Query:  108 EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            +PL+V RV+GDV+D F  +  + V YG ++V NG +++PS   +KP V+I        N YTLVMVDPD PSPS P  RE+L
Sbjct:    7 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLDLRPSQVQNKPRVEIGGED--LRNFYTLVMVDPDVPSPSNPHLREYL 86          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: CET2_TOBAC (CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 3
Query:   96 ARSMEPLVVGRVIGDVVDMFTPATEMTVHY-GTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            ++  +PLV+GRVIG+VVD FTP+ +M+V Y  +K V NG E+ PS+   KP V++H     S   +T++M+DPD P PS+P  RE L
Sbjct:    3 SKMSDPLVIGRVIGEVVDYFTPSVKMSVTYNSSKHVYNGHELFPSSVTSKPRVEVHGGDLRS--FFTMIMIDPDVPGPSDPYLREHL 87          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: CET1_TOBAC (CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   96 ARSMEPLVVGRVIGDVVDMFTPATEMTVHY-GTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            +R +EPLVV RVIG+VVD F P+ ++ V Y G+KQV NG E+ P+  A KP V+I      S+  YTL+M DPD P PS+P  RE L
Sbjct:    3 SRVVEPLVVARVIGEVVDSFNPSVKLNVIYNGSKQVFNGHELMPAVIAAKPRVEIGGEDMRSA--YTLIMTDPDVPGPSDPYLREHL 87          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: SELFP_SOLLC (Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.277e-15
Identity = 42/87 (48.28%), Postives = 56/87 (64.37%), Query Frame = 3
Query:   96 ARSMEPLVVGRVIGDVVDMFTPATEMTVHY-GTKQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            ++  EPLV+GRVIG+VVD F P+ +M+V Y   K V NG E  PS+   KP V++H     S   +TL+M+DPD P PS+P  RE L
Sbjct:    3 SKMCEPLVIGRVIGEVVDYFCPSVKMSVVYNNNKHVYNGHEFFPSSVTSKPRVEVHGGDLRS--FFTLIMIDPDVPGPSDPYLREHL 87          
BLAST of CK739960 vs. ExPASy Swiss-Prot
Match: CEN_ARATH (Protein CENTRORADIALIS-like OS=Arabidopsis thaliana GN=CEN PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.883e-15
Identity = 48/89 (53.93%), Postives = 57/89 (64.04%), Query Frame = 3
Query:   93 MAR-SMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPTPASSNLYTLVMVDPDAPSPSEPRYREWL 353
            MAR S +PL+VGRVIGDVVD    A +MTV Y + KQV NG E+ PS    KP V++H     S   +TLVM DPD P PS+P  RE L
Sbjct:    1 MARISSDPLMVGRVIGDVVDNCLQAVKMTVTYNSDKQVYNGHELFPSVVTYKPKVEVHGGDMRS--FFTLVMTDPDVPGPSDPYLREHL 87          
The following BLAST results are available for this feature:
BLAST of CK739960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MFT_ARATH1.573e-2460.92Protein MOTHER of FT and TF 1 OS=Arabidopsis thali... [more]
TFL1_ARATH4.433e-1952.94Protein TERMINAL FLOWER 1 OS=Arabidopsis thaliana ... [more]
TSF_ARATH2.059e-1651.22Protein TWIN SISTER of FT OS=Arabidopsis thaliana ... [more]
CET4_TOBAC3.512e-1648.28CEN-like protein 4 OS=Nicotiana tabacum GN=CET4 PE... [more]
BFT_ARATH3.512e-1650.00Protein BROTHER of FT and TFL 1 OS=Arabidopsis tha... [more]
FT_ARATH5.991e-1648.78Protein FLOWERING LOCUS T OS=Arabidopsis thaliana ... [more]
CET2_TOBAC5.991e-1647.13CEN-like protein 2 OS=Nicotiana tabacum GN=CET2 PE... [more]
CET1_TOBAC5.991e-1651.72CEN-like protein 1 OS=Nicotiana tabacum GN=CET1 PE... [more]
SELFP_SOLLC2.277e-1548.28Protein SELF-PRUNING OS=Solanum lycopersicum GN=SP... [more]
CEN_ARATH3.883e-1553.93Protein CENTRORADIALIS-like OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6782 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739960 ID=CK739960; Name=CK739960; organism=Citrus sinensis; type=EST; length=353bp
ACACATTCCATTTTATTTCTGGGAGTCCAGGGTGATCGGTTTGAAATTGA
AGAGAAAAGAAATTACAAGTCACAAGAAAGAAGCACGTCGACATGGCGCG
GTCTATGGAGCCACTGGTTGTTGGGAGAGTGATTGGAGATGTAGTTGACA
TGTTCACTCCAGCCACTGAAATGACGGTCCATTATGGGACTAAACAGGTT
GCTAACGGCTGTGAGATCAAGCCCTCTGCTTCTGCTGACAAGCCCAGCGT
CCAAATTCATGCTCCTACTCCTGCCTCTTCCAATCTCTACACACTTGTTA
TGGTGGATCCCGATGCTCCAAGTCCGAGCGAACCCAGATACAGAGAGTGG
CTC
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