CK739974

Overview
NameCK739974
Unique NameCK739974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK739974_ssr1 microsatellite CK739974_ssr1:1..21. BLAST: Citrus ESTs to Prunus persica proteins V1
CK739974_ssr18 microsatellite CK739974_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:83..490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.732e-53
Identity = 99/108 (91.67%), Postives = 104/108 (96.30%), Query Frame = 2
Query:   74 HGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVA 397
            HGKDYVDPPPAPL+DMAELKLWSFYRA+IAEF+ATLLFLYV+VATVIGHK Q+  CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL RAVA
Sbjct:   11 HGKDYVDPPPAPLLDMAELKLWSFYRAIIAEFIATLLFLYVTVATVIGHKNQTGPCGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLPRAVA 118          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 6.087e-53
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 2
Query:   71 HHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            HHGKDYVDPPPAPL+DM ELK WSFYRALIAEF+ATLLFLYV+VATVIGHKKQ+  C GVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   12 HHGKDYVDPPPAPLLDMGELKSWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAL 119          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.165e-50
Identity = 91/109 (83.49%), Postives = 101/109 (92.66%), Query Frame = 2
Query:   68 HHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            H HGKDYVDPPPAP  DM ELKLWSF+RA IAEF+ATLLFLY++VATVIG+KK++D C  VGLLGIAW+FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   13 HQHGKDYVDPPPAPFFDMGELKLWSFWRAAIAEFIATLLFLYITVATVIGYKKETDPCASVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRAL 121          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP26_ORYSJ (Probable aquaporin PIP2-6 OS=Oryza sativa subsp. japonica GN=PIP2-6 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.715e-47
Identity = 91/111 (81.98%), Postives = 99/111 (89.19%), Query Frame = 2
Query:   68 HHHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQS--DACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            H   KDY DPPPAPL D+ EL+LWSFYRALIAEF+ATLLFLY++VATVIG+K QS  D CGGVG LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGL LARKVS+IRAV
Sbjct:   11 HVRPKDYTDPPPAPLFDVGELRLWSFYRALIAEFIATLLFLYITVATVIGYKVQSSADQCGGVGTLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLLLARKVSVIRAV 121          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 6.519e-47
Identity = 89/116 (76.72%), Postives = 100/116 (86.21%), Query Frame = 2
Query:   71 HHGKDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA--------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            H GKDY DPPPAPL+D  EL  WS YRA+IAEFVATLLFLY++VATVIG+K Q+DA        CGGVG+LGIAWAFGGMIF+LVYCTAG+SGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   11 HEGKDYSDPPPAPLVDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQTDAAASGPDAACGGVGVLGIAWAFGGMIFILVYCTAGVSGGHINPAVTFGLFLARKVSLVRAL 126          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 2.477e-46
Identity = 89/113 (78.76%), Postives = 99/113 (87.61%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA--------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY DPPPAPLID AEL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA        CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAI 131          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 3.235e-46
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA--------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY DPPPAPLID AEL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA        CGGVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   19 KDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAL 131          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.225e-46
Identity = 90/113 (79.65%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA--------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY DPPPAPLID+ EL  WS YRA+IAEF+ATLLFLY++VATVIG+K QSDA        C GVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSLIRAV
Sbjct:   18 KDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 130          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.518e-46
Identity = 90/115 (78.26%), Postives = 99/115 (86.09%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA----------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY DPPPAPL+D AEL  WS YRA+IAEF+ATLLFLYV+VATVIG+K Q+DA          CGGVG+LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   19 KDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAL 133          
BLAST of CK739974 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.413e-46
Identity = 88/113 (77.88%), Postives = 98/113 (86.73%), Query Frame = 2
Query:   80 KDYVDPPPAPLIDMAELKLWSFYRALIAEFVATLLFLYVSVATVIGHKKQSDA--------CGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAV 394
            KDY DPPPAPLID  EL  WS YRA+IAEF+ATLLFLY++VATVIG+K Q+DA        CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFGLFLARKVSL+RA+
Sbjct:   18 KDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAL 130          
The following BLAST results are available for this feature:
BLAST of CK739974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
PIP28_ARATH2.732e-5391.67Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP27_ARATH6.087e-5389.81Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP1_ATRCA2.165e-5083.49Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP26_ORYSJ1.715e-4781.98Probable aquaporin PIP2-6 OS=Oryza sativa subsp. j... [more]
PIP25_MAIZE6.519e-4776.72Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP21_ORYSJ2.477e-4678.76Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE3.235e-4679.65Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_ORYSJ4.225e-4679.65Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE5.518e-4678.26Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP24_MAIZE9.413e-4677.88Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6796 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE68G08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739974 ID=CK739974; Name=CK739974; organism=Citrus sinensis; type=EST; length=409bp
AGAAGAAGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAG
AAGGACAAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCA
CCAGCACCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAG
AGCTCTCATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTG
TTGCCACTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTT
GGCCTTTTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGT
TTACTGCACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGT
TTGGGCTGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTTA
CATGGTGGC
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