CK739993

Overview
NameCK739993
Unique NameCK739993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length378
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8588 contig Csv1_Contig8588:41..418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_SOLLC (Photosystem I reaction center subunit II, chloroplastic OS=Solanum lycopersicum GN=psaD PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 6.663e-47
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 2
Query:   80 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI+RQGPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   66 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMRQGPNLLKLARKEQCLALGTRLRSKYKINYQFYR 154          

HSP 2 Score: 25.7942 bits (55), Expect = 6.663e-47
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  152 FYRVFPNGEVQYL 164          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD1_ARATH (Photosystem I reaction center subunit II-1, chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.228e-45
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 2
Query:   77 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI+R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   65 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 154          

HSP 2 Score: 25.7942 bits (55), Expect = 1.228e-45
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  152 FYRVFPNGEVQYL 164          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_NICSY (Photosystem I reaction center subunit II, chloroplastic OS=Nicotiana sylvestris GN=psaD PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.228e-45
Identity = 85/90 (94.44%), Postives = 88/90 (97.78%), Query Frame = 2
Query:   77 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI+R+G NLLKLARKEQCLALGTRLRSKYKI Y+FYR
Sbjct:   61 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGANLLKLARKEQCLALGTRLRSKYKINYRFYR 150          

HSP 2 Score: 25.7942 bits (55), Expect = 1.228e-45
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  148 FYRVFPNGEVQYL 160          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD2_ARATH (Photosystem I reaction center subunit II-2, chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.228e-45
Identity = 85/90 (94.44%), Postives = 87/90 (96.67%), Query Frame = 2
Query:   77 VGFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            VGFTPPQLDPNTPSPIF GSTGGLLRKAQVEEFYVITW SPKEQIFEMPTGGAAI+R+GPNLLKLARKEQCLALGTRLRSKYKI YQFYR
Sbjct:   61 VGFTPPQLDPNTPSPIFAGSTGGLLRKAQVEEFYVITWNSPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKITYQFYR 150          

HSP 2 Score: 25.7942 bits (55), Expect = 1.228e-45
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  148 FYRVFPNGEVQYL 160          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_SPIOL (Photosystem I reaction center subunit II, chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.600e-45
Identity = 85/89 (95.51%), Postives = 88/89 (98.88%), Query Frame = 2
Query:   80 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            GFTPP+LDPNTPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI+R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR
Sbjct:   70 GFTPPELDPNTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 158          

HSP 2 Score: 23.8682 bits (50), Expect = 1.600e-45
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FP+GEVQYL
Sbjct:  156 FYRVFPSGEVQYL 168          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_CUCSA (Photosystem I reaction center subunit II, chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 4.616e-45
Identity = 83/89 (93.26%), Postives = 88/89 (98.88%), Query Frame = 2
Query:   80 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            GF+PP+LDP+TPSPIF GSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAI+R+GPNLLKLARKEQCLALGTRLRSKYKIKYQFYR
Sbjct:   65 GFSPPELDPSTPSPIFAGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 153          

HSP 2 Score: 25.7942 bits (55), Expect = 4.616e-45
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  151 FYRVFPNGEVQYL 163          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_HORVU (Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.524e-44
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 2
Query:   80 GFTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            GF PPQLDP+TPSPIFGGSTGGLLRKAQVEEFYVITW SPKEQ+FEMPTGGAAI+R+GPNLLKLARKEQCLALG RLRSKYKI YQFYR
Sbjct:   63 GFVPPQLDPSTPSPIFGGSTGGLLRKAQVEEFYVITWTSPKEQVFEMPTGGAAIMREGPNLLKLARKEQCLALGNRLRSKYKIAYQFYR 151          

HSP 2 Score: 25.7942 bits (55), Expect = 6.524e-44
Identity = 10/13 (76.92%), Postives = 11/13 (84.62%), Query Frame = 3
Query:  339 FTGIFPNGEVQYL 377
            F  +FPNGEVQYL
Sbjct:  149 FYRVFPNGEVQYL 161          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_CHLRE (Photosystem I reaction center subunit II, chloroplastic OS=Chlamydomonas reinhardtii GN=psaD PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.748e-34
Identity = 68/88 (77.27%), Postives = 78/88 (88.64%), Query Frame = 2
Query:   83 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKIKYQFYR 346
            +T P L+P+TPSPIFGGSTGGLLRKAQ EEFYVITWE+ KEQIFEMPTGGAAI+RQGPNLLK  +KEQCLAL T+LR+K+K+   FYR
Sbjct:   53 WTVPTLNPDTPSPIFGGSTGGLLRKAQTEEFYVITWEAKKEQIFEMPTGGAAIMRQGPNLLKFGKKEQCLALTTQLRNKFKLTPCFYR 140          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_CYAPA (Photosystem I reaction center subunit II, cyanelle OS=Cyanophora paradoxa GN=psaD PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.353e-28
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 2
Query:   83 FTPPQLDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYR 346
            F+ P L+ N P+PIFGGSTGGLLRKA+VEEFY ITW    E +FE+PTGGAAI+R G NLL+LARKEQC+ALG +L+ K+KI  Y+ YR
Sbjct:   74 FSVPTLNLNAPTPIFGGSTGGLLRKAEVEEFYSITWTGKSETVFELPTGGAAIMRAGENLLRLARKEQCIALGAQLKDKFKITDYKIYR 162          
BLAST of CK739993 vs. ExPASy Swiss-Prot
Match: PSAD_GUITH (Photosystem I reaction center subunit II OS=Guillardia theta GN=psaD PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.176e-25
Identity = 56/84 (66.67%), Postives = 67/84 (79.76%), Query Frame = 2
Query:   98 LDPNTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIIRQGPNLLKLARKEQCLALGTRLRSKYKI-KYQFYR 346
            L+   PSP F GSTGG LR A+ EE Y ITW SPKEQ+FEMPTGGAAI+R+G NLL LARKEQCLALGT++++ +KI  Y+ YR
Sbjct:    5 LNLQIPSPTFEGSTGGWLRAAETEEKYAITWTSPKEQVFEMPTGGAAIMRKGENLLYLARKEQCLALGTQVKTSFKITDYKIYR 88          

HSP 2 Score: 23.483 bits (49), Expect = 1.176e-25
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  348 IFPNGEVQYL 377
            IFP+GEVQYL
Sbjct:   89 IFPSGEVQYL 98          
The following BLAST results are available for this feature:
BLAST of CK739993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
PSAD_SOLLC6.663e-4797.75Photosystem I reaction center subunit II, chloropl... [more]
PSAD1_ARATH1.228e-4594.44Photosystem I reaction center subunit II-1, chloro... [more]
PSAD_NICSY1.228e-4594.44Photosystem I reaction center subunit II, chloropl... [more]
PSAD2_ARATH1.228e-4594.44Photosystem I reaction center subunit II-2, chloro... [more]
PSAD_SPIOL1.600e-4595.51Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CUCSA4.616e-4593.26Photosystem I reaction center subunit II, chloropl... [more]
PSAD_HORVU6.524e-4491.01Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CHLRE3.748e-3477.27Photosystem I reaction center subunit II, chloropl... [more]
PSAD_CYAPA2.353e-2866.29Photosystem I reaction center subunit II, cyanelle... [more]
PSAD_GUITH1.176e-2566.67Photosystem I reaction center subunit II OS=Guilla... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6487 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK739993 ID=CK739993; Name=CK739993; organism=Citrus sinensis; type=EST; length=378bp
CTTCTCCATGGCTCAAAGAACCGCTAGAGCCGCAGCCGCCGAAGAAAAAA
CCGAAGCACCCACGAAGGAGGCTCCAGTAGGCTTCACCCCACCGCAGCTA
GACCCAAACACCCCATCCCCAATCTTCGGAGGAAGCACTGGGGGATTGTT
GAGAAAGGCCCAAGTTGAAGAATTCTATGTCATCACATGGGAGTCGCCAA
AGGAACAAATCTTTGAGATGCCGACTGGTGGAGCTGCCATTATTAGGCAA
GGTCCTAACTTGCTTAAGTTGGCTAGGAAAGAACAGTGCTTGGCTCTTGG
TACTAGATTGAGATCAAAGTACAAGATCAAGTACCAGTTTTACAGGGATC
TTTCCTAATGGTGAGGTTCAATATCTTC
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