CK740009

Overview
NameCK740009
Unique NameCK740009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   66 TCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   66 TCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   66 TCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  567 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 3 
Query:   66 TCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  568 TCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  527 WENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  526 WENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  527 WENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  526 WENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  526 WENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642
[Close]
BLAST of CK740009 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 54/117 (46.15%), Postives = 67/117 (57.26%), Query Frame = 3 
Query:    3 WLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 353
            W NQ                 T AEI+IV+CYFQLC+ED+ WWWRS+LT+GSS               L ITK +S +L F Y  I S AF  LTGTIGFY+C++  R IYSS+ I+
Sbjct:  526 WDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSFFRY-LGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641
The following BLAST results are available for this feature:
BLAST of CK740009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TM9S2_RAT1.932e-2555.21Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.932e-2555.21Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.932e-2555.21Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.932e-2555.21Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT1.808e-2341.88Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB1.808e-2341.88Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE1.808e-2341.88Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN1.808e-2341.88Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN1.808e-2341.88Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]
PHG1A_DICDI1.172e-2246.15Putative phagocytic receptor 1a OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6503 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740009 ID=CK740009; Name=CK740009; organism=Citrus sinensis; type=EST; length=590bp
TCTGGCTGAACCAGTTCTATTACATCTTTGGTTTCCTCTTCTTGGTCTTC
GTCATTCTCATTGTCACCTGTGCCGAAATAACCATTGTGCTATGCTACTT
CCAGTTGTGCAGTGAGGACTACCAATGGTGGTGGAGGTCATATCTTACAT
CAGGCTCTTCTGCTCTGTACCTCTTCCTTTACGCAACATTCTACTTCTTC
ACAAAGCTTGAAATAACCAAGCTGGTTTCTGGAATACTCTACTTTGGTTA
CATGCTGATTGCTTCATATGCATTTTTTGTACTAACGGGCACCATTGGAT
TTTATGCATGCTTTTGGTTCACAAGGCTGATTTACTCATCGGTGAAGATC
GATTAATTGATGAAACTGGAGAACGGGCATATTTCGATCGTCTGAAACAG
ATTATCTCAGGGTAAGGTTCAGTTCAGGAGTATGATATAATTATGCCTTT
CAGATGTGAACTTTCATGCTCATTTTTGTATGGAGACAAGGTTATTATCC
TGTTTTTTACACAATATTTTATTCTTAATTTTTCGTCGTACACCACCGTT
CTGTTATAGGATGTCCCTATCAGTGAGTTTGGGACTTTTA
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