CK740012

Overview
NameCK740012
Unique NameCK740012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length353
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:651..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.155e-41
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.028e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 7.028e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  187 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  188 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            PLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  187 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            P+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  128 PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of CK740012 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.179e-41
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 3 
Query:    3 PLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 239
            P+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  177 PIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
The following BLAST results are available for this feature:
BLAST of CK740012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_ORYSJ3.155e-41100.00Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_PETSP7.028e-4198.73Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_ORYSJ7.028e-4198.73Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC9.179e-4198.73Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC9.179e-4198.73Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB24_PETSP9.179e-4198.73Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_NICPL9.179e-4198.73Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB22_TOBAC9.179e-4198.73Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB22_CUCSA9.179e-4197.47Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA9.179e-4197.47Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6506 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740012 ID=CK740012; Name=CK740012; organism=Citrus sinensis; type=EST; length=353bp
ACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGAC
CCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTT
GGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCA
AGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAAC
AATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGT
TGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTT
GTGAGCTCATGGAAGCCTTTAATTTGAGTTGCGATTATTTATAAAATGCT
TCA
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