CK740041

Overview
NameCK740041
Unique NameCK740041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4453 contig Csv1_Contig4453:215..703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740041 vs. ExPASy Swiss-Prot
Match: SKU5_ARATH (Monocopper oxidase-like protein SKU5 OS=Arabidopsis thaliana GN=SKU5 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.863e-38
Identity = 77/116 (66.38%), Postives = 91/116 (78.45%), Query Frame = 3
Query:    3 TYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKPEDI--SAATAITGDRLKMFFTLLMTMCAMLVLFH 344
            TYNKWDGIAR+T QVYPGAW+AIL+SLDN G WNLRTENLDSWYLGQETYVRVVNP+  NKTEF  PDN L+CGALS LQKP+ +  SA+ +I    L M   ++M +  M++L H
Sbjct:  475 TYNKWDGIARSTIQVYPGAWSAILISLDNPGAWNLRTENLDSWYLGQETYVRVVNPDENNKTEFGHPDNVLYCGALSKLQKPQKVSSSASKSIGFTSLSM---VVMALVMMMMLQH 587          
BLAST of CK740041 vs. ExPASy Swiss-Prot
Match: SKS1_ARATH (Monocopper oxidase-like protein SKS1 OS=Arabidopsis thaliana GN=SKS1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.262e-34
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 3
Query:    3 TYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKPEDISAATAITGDRLKMFFTLLMTMCAMLVLF 341
            +YN WD I+R+T +VYPG WTA+L+SLDNVG+WN+R ENLD WYLG+ETY+R+ NPE   KTE   PDN L+CGAL +LQK +  SAAT+I    LK+   LLM + A +  F
Sbjct:  478 SYNNWDAISRSTIEVYPGGWTAVLISLDNVGVWNIRVENLDRWYLGEETYMRITNPEEDGKTEMDPPDNVLYCGALKNLQKEQHHSAATSILNGHLKLM--LLMVLLASVFRF 588          
BLAST of CK740041 vs. ExPASy Swiss-Prot
Match: SKS2_ARATH (Monocopper oxidase-like protein SKS2 OS=Arabidopsis thaliana GN=SKS2 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.711e-33
Identity = 59/114 (51.75%), Postives = 85/114 (74.56%), Query Frame = 3
Query:    3 TYNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKPEDISAAT-AITGDRLKMFFTLLMTMCAMLVLF 341
            +YN WD +AR+T +VYPGAWTA+L+SLDNVG+WN+R ENLD WYLGQETY+R++NPE    TE   P+N ++CGAL  +QK +  S+AT ++T  +L + F+++M + +    F
Sbjct:  478 SYNNWDAVARSTVEVYPGAWTAVLISLDNVGVWNIRVENLDRWYLGQETYMRIINPEENGSTEMDPPENVMYCGALQAMQKEQHHSSATKSMTNGQLILIFSMMMVLLSSFSSF 591          
BLAST of CK740041 vs. ExPASy Swiss-Prot
Match: ASOL_BRANA (L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 3
Query:    6 YNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKP 248
            YN  D ++R T QVYP  W AIL++ DN G+WN+R+EN +  YLGQ+ Y  V++PE + + E+ +P+ +L CG + +  KP
Sbjct:  468 YNLLDAVSRHTVQVYPKCWAAILLTFDNCGMWNVRSENTERRYLGQQLYASVLSPEKSLRDEYNMPETSLQCGLVKNTPKP 548          
BLAST of CK740041 vs. ExPASy Swiss-Prot
Match: ASOL_TOBAC (L-ascorbate oxidase homolog OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:    6 YNKWDGIARTTTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYVRVVNPEATNKTEFPIPDNALFCGALSHLQKPEDISA 263
            YN  DG++R   QVYP +W AI+++ DN G+WNLR+E  +  YLG++ Y  V++P  + + E+ IPDN   CG +  L  P    A
Sbjct:  469 YNLVDGLSRNNIQVYPNSWAAIMLTFDNAGMWNLRSEMWEKTYLGEQLYFSVLSPSRSLRDEYNIPDNHPLCGIVKGLSMPAPYKA 554          
The following BLAST results are available for this feature:
BLAST of CK740041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SKU5_ARATH4.863e-3866.38Monocopper oxidase-like protein SKU5 OS=Arabidopsi... [more]
SKS1_ARATH3.262e-3457.52Monocopper oxidase-like protein SKS1 OS=Arabidopsi... [more]
SKS2_ARATH4.711e-3351.75Monocopper oxidase-like protein SKS2 OS=Arabidopsi... [more]
ASOL_BRANA8.072e-1744.44L-ascorbate oxidase homolog OS=Brassica napus GN=B... [more]
ASOL_TOBAC5.232e-1641.86L-ascorbate oxidase homolog OS=Nicotiana tabacum P... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6535 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740041 ID=CK740041; Name=CK740041; organism=Citrus sinensis; type=EST; length=489bp
GCACATATAACAAGTGGGATGGTATTGCCCGCACCACAACACAGGTCTAT
CCTGGCGCATGGACTGCAATCTTGGTATCACTTGACAATGTGGGGATCTG
GAATCTCAGAACAGAAAACCTTGACTCGTGGTATCTTGGCCAAGAAACAT
ACGTTAGAGTTGTCAATCCGGAGGCTACAAATAAAACTGAGTTTCCCATA
CCGGACAATGCCCTCTTTTGCGGTGCCCTCAGTCACCTGCAGAAGCCAGA
AGACATCTCTGCGGCAACCGCAATTACTGGTGATAGATTGAAGATGTTCT
TCACGCTGCTGATGACCATGTGTGCTATGCTGGTACTCTTCCACTAAGCA
ATTACCTTTAGGATGTTTTCTCTTCTCCCCCACGTTGCATCTTGGCTTCT
CAGTGAGCTTTATGGTTGTGAGTGTGTAGGTGTGTAATTTTAGTCTTGTT
GATACCATTCTTCTGTCATTTAGACCTGTATTTTTTCTG
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