CK740042

Overview
NameCK740042
Unique NameCK740042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length399
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740042_ssr209 microsatellite CK740042_ssr209:209..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:256..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.978e-16
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   40 TTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   65 TTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.103e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   66 TTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 37/52 (71.15%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   63 TTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   64 TTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   40 TTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   40 TTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 31/52 (59.62%), Postives = 39/52 (75.00%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   64 TTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 34/52 (65.38%), Postives = 40/52 (76.92%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TTPDRQAACNCLK A G+I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   58 TTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of CK740042 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 3
Query:    3 TTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 158
            TT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:   40 TTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CK740042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
LTP1_MORNI9.978e-1667.31Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN6.468e-1567.31Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.103e-1463.46Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP1_TOBAC1.882e-1471.15Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_MALDO4.192e-1463.46Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE4.192e-1463.46Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR4.192e-1463.46Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PYRCO2.081e-1359.62Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP4_LENCU2.081e-1365.38Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP1_PRUDO2.081e-1361.54Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6536 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740042 ID=CK740042; Name=CK740042; organism=Citrus sinensis; type=EST; length=399bp
GAACCACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTAC
GGAACAATCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCA
ATGTGGAGTCAGAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCTA
GGGTCAGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGA
CTGAGAAGAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGA
ACGAGTCTCCACTTGTATGAGTTTCACTCTCATGTCATGTTTGTATATTT
GCTTTTTATGTCATATTAAATATGTAAACGCGATCTGTGTTTTGAGTGAT
TAATTATAGTTATTTTGTGGTATTATCTTAAAAAAAAAAAAAAAAAAAA
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