CK740058

Overview
NameCK740058
Unique NameCK740058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13335 contig Csv1_Contig13335:936..1448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.581e-61
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  475 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 7.846e-61
Identity = 108/110 (98.18%), Postives = 110/110 (100.00%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITD+IHPAGWHEWDGNFALNTLFYGEHQN+GAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL
Sbjct:  475 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 584          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 8.695e-52
Identity = 94/110 (85.45%), Postives = 101/110 (91.82%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL+PVQ SFPTYLGRPWKEYSRTVIMQSSITDVI PAGWHEW+GNFAL+TLFYGE+ N GAGA TSGRVKWKG +VITS+TEAQA+TPG FIAG SWL STGFPFSLGL
Sbjct:  474 SDLRPVQKSFPTYLGRPWKEYSRTVIMQSSITDVIQPAGWHEWNGNFALDTLFYGEYANTGAGAPTSGRVKWKGHKVITSSTEAQAYTPGRFIAGGSWLSSTGFPFSLGL 583          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 8.138e-50
Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL+PVQ SFPTYLGRPWKEYSRTV+MQSSIT+VI+PAGW  WDGNFAL+TL+YGE+QN GAGA TSGRV WKGF+VITS+TEAQ FTPGSFIAG SWL +T FPFSLGL
Sbjct:  210 SDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.138e-43
Identity = 80/110 (72.73%), Postives = 91/110 (82.73%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL+ V+GSFPTYLGRPWKEYS+TVIMQS+I+DVI P GW EW G FALNTL Y E+ N GAGAGT+ RVKW+GF+VIT+A EAQ +T G FI G  WL STGFPFSLGL
Sbjct:  483 SDLQSVKGSFPTYLGRPWKEYSQTVIMQSAISDVIRPEGWSEWTGTFALNTLTYREYSNTGAGAGTANRVKWRGFKVITAAAEAQKYTAGQFIGGGGWLSSTGFPFSLGL 592          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 4.325e-43
Identity = 80/110 (72.73%), Postives = 89/110 (80.91%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL  V+G+FPTYLGRPWKEYSRTVIMQS I+DVI P GWHEW G+FAL+TL Y E+ N G GAGT+ RVKWKG++VITS TEAQ FT G FI G  WL STGFPFSL L
Sbjct:  478 SDLLAVKGTFPTYLGRPWKEYSRTVIMQSDISDVIRPEGWHEWSGSFALDTLTYREYLNRGGGAGTANRVKWKGYKVITSDTEAQPFTAGQFIGGGGWLASTGFPFSLSL 587          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.348e-36
Identity = 69/110 (62.73%), Postives = 85/110 (77.27%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            +DL+PV+ +F +YLGRPWKEYSRTV+M+S I+DVI PAGW EWD +FAL TLFYGE++N G G+GTS RVKW G+ VITS   A+ FT    I G SWLGSTG  ++ GL
Sbjct:  434 ADLEPVEDTFKSYLGRPWKEYSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 8.735e-36
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL+PV GS  TYLGRPW++YSRTV M++S+  +I P GW EWDGNFAL TLFY E QN G GA TSGRV W GFRV+ SA+EA  FT G+F+AG SW+ S+  PF+ GL
Sbjct:  403 SDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIPSS-VPFTSGL 511          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 5.662e-35
Identity = 63/110 (57.27%), Postives = 85/110 (77.27%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDLKPVQ S  T+LGRPWK+YSRTV +++ +  +I+PAGW EW G+FALNTL+Y E+ N G G+ T+ RVKW+G+ V+TS ++   FT G+FIAG+SWL +T  PF+ GL
Sbjct:  401 SDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of CK740058 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 145.591 bits (366), Expect = 1.261e-34
Identity = 68/110 (61.82%), Postives = 79/110 (71.82%), Query Frame = 2
Query:    2 SDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDVIHPAGWHEWDGNFALNTLFYGEHQNAGAGAGTSGRVKWKGFRVITSATEAQAFTPGSFIAGSSWLGSTGFPFSLGL 331
            SDL+PV   FPTYLGRPWKEYSRTV+M+S +  +I+PAGW EWDG+FAL TL+YGE  N G GAGTS RVKW G+ VIT   +A  FT    I G SWL STG  +  GL
Sbjct:  435 SDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
The following BLAST results are available for this feature:
BLAST of CK740058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PME3_CITSI1.581e-61100.00Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI7.846e-6198.18Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC8.695e-5285.45Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_DAUCA8.138e-5081.82Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_ARATH1.138e-4372.73Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH4.325e-4372.73Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME1_FICAW1.348e-3662.73Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]
PME17_ARATH8.735e-3663.64Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME2_CITSI5.662e-3557.27Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME1_SOLLC1.261e-3461.82Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6552 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE64H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740058 ID=CK740058; Name=CK740058; organism=Citrus sinensis; type=EST; length=513bp
CTCCGATTTAAAACCGGTTCAGGGTAGTTTCCCGACGTACCTCGGCAGGC
CCTGGAAGGAGTACTCGAGGACGGTGATCATGCAGTCATCGATTACTGAC
GTGATCCACCCTGCCGGGTGGCACGAGTGGGATGGTAACTTCGCGTTGAA
CACATTGTTTTACGGAGAGCATCAGAACGCCGGAGCCGGTGCCGGAACTT
CAGGGAGAGTGAAATGGAAGGGATTTAGGGTTATTACAAGTGCTACCGAG
GCTCAAGCTTTTACTCCTGGAAGCTTCATTGCTGGTAGTAGCTGGCTGGG
CTCCACTGGTTTCCCATTCTCCCTTGGTTTGTAATATTCACTAGGAGTTT
TAATTAATATGTTTTGTATTAGTGGATCCATAGGTCTCTGGTCTTTCAAT
TTGTAATATTTGATTGAGCGTGTCTTATTCGTGGCTTCGATTTCACAAAT
ACTATTGTGTGATTAACAAGAAATAAAATAGCATGGGAAGAATAAAAAAA
AAAAAAAAAAAAA
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