CK740065

Overview
NameCK740065
Unique NameCK740065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK740065 vs. ExPASy Swiss-Prot
Match: SEC14_SCHPO (Sec14 cytosolic factor OS=Schizosaccharomyces pombe GN=sec14 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.454e-11
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 2 
Query:    2 WNTVKSFLDPKTTSKIHVLGNKYQSKLLEIIDARELPEFLGGTCNCADQGGCLRSDKGPWQNPE 193
            +N +K FLD  T  KIH+LG+ Y+S LLE I A  LP  LGG C C   GGC  SD GPW   +
Sbjct:  220 FNLIKGFLDEATVKKIHILGSNYKSALLEQIPADNLPAKLGGNCQC--PGGCELSDAGPWHEEQ 281
The following BLAST results are available for this feature:
BLAST of CK740065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SEC14_SCHPO2.454e-1151.56Sec14 cytosolic factor OS=Schizosaccharomyces pomb... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6559 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740065 ID=CK740065; Name=CK740065; organism=Citrus sinensis; type=EST; length=640bp
GTGGAACACTGTGAAAAGTTTTCTAGACCCTAAAACAACTTCCAAGATTC
ATGTTCTTGGAAACAAGTACCAGAGCAAATTGCTTGAGATAATTGATGCC
AGAGAGTTGCCAGAGTTTCTTGGAGGTACCTGTAATTGTGCAGATCAGGG
AGGTTGTCTTCGGTCTGATAAGGGGCCATGGCAAAACCCAGAGATATTGA
AGATGGTGCTTAATGGAGGAGCACCGCGAGCCAGGCAGATTGTGAAAGTT
CTAAACAGCGATGGGAAAGTCATTGCTTATGCTAAGCCGCCAATGTTAAA
AGGTAGTGATACATCTACTGCTGAGTCTGGATCAGAAGCAGAAGATATTG
CTTCCCCAAAGGCAATGAAGAGTTATTCACATCTTCGATTGACTCCTGTC
CGTGAAGAAGCAAAGGTTGTTGGGAAAACAAGCTATGCTGGAAGCTTCTC
TGGGTATGATGAATATGTTCCCATGGTTGATAAAGCTGTTGACTCTAGTT
GGAAGAAGCAACCATCTCTCAGAAGTCCTGCTGCCAAAGGAAGTCTTCCC
CAGCTTCCCACTTCAAAGACTCCAGAAGGGATTCGTGCTCGGATTTGGGC
AGCAGTTATGGCCTTCTTCATGATGTTTGGAACTGTCTTC
back to top