CK740079

Overview
NameCK740079
Unique NameCK740079
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12474 contig Csv1_Contig12474:94..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK740079 vs. ExPASy Swiss-Prot
Match: FABI_BRANA (Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.354e-37
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  213 GNTAAFLASPLASAITGAVIYVDNGLNAMGVGVDSPIFKDLD 338
            GN AAFL SPLASAITGA IYVDNGLN+MGV +DSP+FKDL+
Sbjct:  343 GNAAAFLVSPLASAITGATIYVDNGLNSMGVALDSPVFKDLN 384

HSP 2 Score: 65.4698 bits (158), Expect = 1.354e-37
Identity = 33/44 (75.00%), Postives = 35/44 (79.55%), Query Frame = 2 
Query:  101 AGPLRSRAAKAIGFIDTMIEYSLANAPLQKELSADEVGEHCCLL 232
            AGPL SRAAKAIGFIDTMIEYS  NAP+QK L+ADEVG     L
Sbjct:  306 AGPLGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADEVGNAAAFL 349

HSP 3 Score: 58.9214 bits (141), Expect = 1.354e-37
Identity = 30/33 (90.91%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    1 GGMSSAKAALESDTRVLAFEAGRKHRIRVNAIS 99
            GGMSSAKAALESDTRVLAFEAGRK  IRVN IS
Sbjct:  273 GGMSSAKAALESDTRVLAFEAGRKQNIRVNTIS 305
The following BLAST results are available for this feature:
BLAST of CK740079 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FABI_BRANA1.354e-3780.95Enoyl-[acyl-carrier-protein] reductase [NADH], chl... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6573 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE65B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740079 ID=CK740079; Name=CK740079; organism=Citrus sinensis; type=EST; length=632bp
GGAGGAATGAGTTCTGCTAAAGCTGCACTAGAGAGTGACACACGAGTGCT
TGCTTTTGAAGCTGGGAGAAAACACAGAATCAGGGTCAACGCCATCTCGG
GCTGGTCCGCTGAGAAGTCGTGCTGCAAAAGCAATTGGATTCATTGATAC
AATGATTGAATATTCATTAGCCAATGCACCATTGCAGAAAGAATTATCTG
CAGATGAGGTGGGGGAACACTGCTGCCTTCTTAGCATCACCTTTGGCCTC
CGCCATCACCGGTGCTGTAATCTATGTTGACAATGGTCTGAATGCAATGG
GAGTCGGAGTCGACAGTCCAATATTTAAAGACCTTGACATTCCAACAGAC
AAGCACTAGAAGGGGGTACCCGATTATCAGCACTACCCCACTCCATAGGA
CACCTAGGTCAGCGGCACCCCTTTTCTTGTGAGAATTTCTGTATTACCTT
TTCAGGGATTGAGCTTGAGTATAAACTTTTAGTCAAGTCAACAACTTTAA
ATTGTGTTTTCAGTGTTAGTGCTTAGTTTGAACGTCTAAACTCAAGGTTT
CATTGTGCTCTAATTCAGTTGTAAGATTGCTTCCCAATCTAATAAAACAT
ACCAAAGGTAATCTGAAAAAAAAAAAAAAAAA
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