CK740155

Overview
NameCK740155
Unique NameCK740155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK740155_ssr165 microsatellite CK740155_ssr165:165..176. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4353 contig Csv1_Contig4353:35..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B1_MEDTR (Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.120e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   57 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.462e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   47 SVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B_CAPAN (Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.910e-43
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            SIETYKIYIFKVLKQVHPDIGISSK+MGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   54 SIETYKIYIFKVLKQVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B_GOSHI (Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.494e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   56 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 147
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B3_SOLLC (Histone H2B.3 (Fragment) OS=Solanum lycopersicum GN=H2B-3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.556e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   46 AVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 137
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 5.556e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            ++ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   57 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B11_ARATH (Histone H2B.11 OS=Arabidopsis thaliana GN=At5g59910 PE=1 SV=5)

HSP 1 Score: 173.326 bits (438), Expect = 5.556e-43
Identity = 88/92 (95.65%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 9.477e-43
Identity = 89/92 (96.74%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   41 STETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 9.477e-43
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   54 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145
[Close]
BLAST of CK740155 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 9.477e-43
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:  189 SIETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAGTKFTSS 464
            S+ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA ESS+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKA TKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150
The following BLAST results are available for this feature:
BLAST of CK740155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_MEDTR1.120e-4397.83Probable histone H2B.1 OS=Medicago truncatula PE=3... [more]
H2B3_MEDTR1.462e-4396.74Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B_CAPAN1.910e-4397.83Histone H2B OS=Capsicum annuum GN=HIS2B PE=2 SV=3[more]
H2B_GOSHI2.494e-4396.74Histone H2B OS=Gossypium hirsutum GN=HIS2B PE=2 SV... [more]
H2B3_SOLLC5.556e-4395.65Histone H2B.3 (Fragment) OS=Solanum lycopersicum G... [more]
H2B1_ARATH5.556e-4395.65Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B11_ARATH5.556e-4395.65Histone H2B.11 OS=Arabidopsis thaliana GN=At5g5991... [more]
H2B9_ARATH9.477e-4396.74Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B7_ARATH9.477e-4395.65Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH9.477e-4395.65Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6649 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66B09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740155 ID=CK740155; Name=CK740155; organism=Citrus sinensis; type=EST; length=511bp
TTTACTTTCAATTCCTCGCGAACCCGCAGTTTTTTCTGACGATGGCTCCA
AAGGCGGAGAAGAAGCCAGCGGAGGAGAAGAAGACACCGGTGGCGGAGAA
GGCGCCTGCCGAGAAGAAGCCGAAGGCCGGGAAGAAGCTTCCGAAGGAAG
CCGCAGCCGGTGCTAAGAAGAAGAAGCGCACGAAGAAGAGCATTGAGACG
TACAAGATCTACATATTCAAAGTCCTGAAGCAAGTCCATCCAGATATCGG
AATCTCGAGCAAGGCTATGGGAATTATGAACAGTTTCATCAACGATATTT
TCGAGAAGCTTGCTCAGGAATCTTCCAGGCTGGCAAGGTACAACAAGAAG
CCGACGATAACTTCTCGTGAAATCCAGACCGCTGTGAGACTTGTGCTTCC
TGGTGAGCTGGCTAAGCATGCCGTTTCTGAGGGTACCAAGGCGGGTACCA
AGTTCACCTCGTCTTAATTAGGGTTAGGGTTGACTATGTGCGATGAATTG
GGGGTAGTGAT
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