CK740163

Overview
NameCK740163
Unique NameCK740163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length453
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.508e-26
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 193
            ILAGG FSGASMNPARSFGPALVSG+WTDHWVYWVGPLIGGGLAGFIYE+  I R HVP+  +E
Sbjct:  181 ILAGGAFSGASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGFIYENVLIDRPHVPVADDE 244          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.380e-22
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVR-SHVPIPYEEARF 202
            +LAGGPFSGASMNPARSFGPALV+G W DHWVYWVGPLIGG LAG +Y+  F+ +  H P+P ++  F
Sbjct:  185 VLAGGPFSGASMNPARSFGPALVAGVWADHWVYWVGPLIGGPLAGLVYDGLFMAQGGHEPLPRDDTDF 252          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.847e-22
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFI-VRSHVPIPYEEARF 202
            ILAGGP+SGASMNPARSFGPAL +G+W DHW+YWVGPLIGG LAG +YE  F+    H P+P  +  F
Sbjct:  184 ILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVYEGLFMGPPGHEPLPRNDGDF 251          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.602e-21
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSHVPI 181
            LAGG F+GASMNPARSFGPAL +GDWT+HWVYW+GPL+GG LAGF+YE  F+V + H P+
Sbjct:  191 LAGGNFTGASMNPARSFGPALATGDWTNHWVYWIGPLLGGPLAGFVYESLFLVQKMHEPL 250          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.291e-20
Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIP 184
            ILAGG FSGASMNPA +FGPA+VS  WT+HWVYW GPL+GGG+AG IYE FFI  +H  +P
Sbjct:  187 ILAGGAFSGASMNPAVAFGPAVVSWTWTNHWVYWAGPLVGGGIAGLIYEVFFINTTHEQLP 247          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.202e-20
Identity = 41/60 (68.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSHVPI 181
            LAGG F+GASMNPARSFGPA+ +G WT+HWVYW+GPL+GG LAGF+YE  F+V ++H P+
Sbjct:  193 LAGGNFTGASMNPARSFGPAMATGVWTNHWVYWIGPLLGGSLAGFVYESLFMVNKTHEPL 252          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.757e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 193
            ILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:  185 ILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.757e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 193
            ILA GPFSG SMNPARSFGPA+V+GD++ +W+YW GPLIGGGLAGFIY   FI   H P+P  E
Sbjct:  185 ILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDVFI-GCHTPLPTSE 247          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.408e-20
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 2
Query:    5 LAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIV-RSHVPI 181
            +AGG FSGASMNPARSFGPAL +G WT HW+YW+GPLIGG LAG +YE  F+V R+H P+
Sbjct:  187 IAGGNFSGASMNPARSFGPALATGVWTHHWIYWLGPLIGGPLAGLVYESLFLVKRTHEPL 246          
BLAST of CK740163 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.369e-20
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 ILAGGPFSGASMNPARSFGPALVSGDWTDHWVYWVGPLIGGGLAGFIYEHFFIVRSHVPIPYEE 193
            ILA GPFSG SMNPARSFGPA+ SGD++ +W+YW GPLIGG LAGFIY   FI  +H P+P  E
Sbjct:  185 ILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFIT-AHAPLPTSE 247          
The following BLAST results are available for this feature:
BLAST of CK740163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
TIP41_ARATH3.508e-2682.81Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP44_MAIZE1.380e-2267.65Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP43_ORYSJ6.847e-2266.18Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP41_MAIZE2.602e-2171.67Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP11_ARATH1.291e-2070.49Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP42_MAIZE2.202e-2068.33Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP2_TOBAC3.757e-2068.75Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC3.757e-2068.75Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP41_ORYSJ6.408e-2070.00Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA8.369e-2067.19Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6657 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740163 ID=CK740163; Name=CK740163; organism=Citrus sinensis; type=EST; length=453bp
CATCTTGGCTGGTGGACCTTTCTCCGGCGCCTCAATGAACCCGGCACGAT
CCTTCGGACCGGCTTTGGTCAGCGGAGACTGGACCGATCATTGGGTTTAC
TGGGTTGGGCCTCTCATTGGAGGTGGGCTTGCTGGGTTCATTTATGAACA
TTTCTTCATCGTCAGGTCTCATGTTCCCATTCCGTACGAGGAAGCCAGAT
TTTAATTAACTAACCGAATCCAATGGCGTGATGGACCACGGTGTTATCTG
TGGGTCACTATTTTGTTAAATTAAGTGAATGATGTACCACGTGTGTCTTA
TGTGTATGAATACTGTAATATTACAAGCTGCTGTTTCTCTCTTGATGTAC
TTTTAGTCTCGGTGCAGGTCTTGTTAATTGATCCGAGAACTTTTTTGGCT
GCTGTCATTTTGGCTGCTCTGTTCTAATTTTGTGATTAAAAAAAAAAAAA
AAA
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