CK740203

Overview
NameCK740203
Unique NameCK740203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1501 contig Csv1_Contig1501:135..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK740203 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 1.519e-46
Identity = 96/113 (84.96%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:    3 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 341
            KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:   24 KAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CK740203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 191
Match NameE-valueIdentityDescription
H32_WHEAT1.519e-4684.96Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_TOBAC1.519e-4684.96Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR1.519e-4684.96Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_PEA1.519e-4684.96Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ORYSJ1.519e-4684.96Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI1.519e-4684.96Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_ONOVI1.519e-4684.96Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA1.519e-4684.96Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]
H32_MAIZE1.519e-4684.96Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES1.519e-4684.96Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6698 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE66H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740203 ID=CK740203; Name=CK740203; organism=Citrus sinensis; type=EST; length=470bp
CAAAGGCGGCTCGGAAGTCGGCGCCAGCGACGGGAGGAGTGAAGAAGCCT
CACCGTTTTAGGCCAGGAACCGTGGCTTTAAGAGAAATTAGGAAGTACCA
GAAGAGCACTGAGCTTTTGATAAGGAAGCTTCCGTTCCAGAGGCTCGTGA
GAGAAATCGCTCAGGATTTTAAGACCGATCTGAGGTTCCAGAGCAGCGCC
GTTGCGGCTCTTCAAGAAGCTGCTGAGGCTTATCTTGTGGGTCTCTTTGA
AGATACCAATCTCTGCGCCATTCATGCTAAGAGGGTCACTATCATGCCCA
AAGATATTCAGCTTGCTAGGAGGATCAGAGGAGAGAGAGCTTAGTCGATT
AATTGATTTGTATCTAGATCTGATTTGGCTTTTAGCGTTTCAGTTTCTAA
GAAATGGGTATGCAAGATTGTTTTGGAATGTAATGGAAAGTTTGAATCTA
TTGTTACATTTGTTGGGTTT
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