CK740221

Overview
NameCK740221
Unique NameCK740221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig416 contig Csv1_Contig416:18..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK740221 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.847e-36
Identity = 81/145 (55.86%), Postives = 99/145 (68.28%), Query Frame = 3
Query:   96 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNS 521
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNS
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNS 145          
BLAST of CK740221 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  111 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG 461
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPG 132          
BLAST of CK740221 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   84 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHL 506
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP+ K       S    A++  Q  ++   TG  ++A+  A   ++ L
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARS---AAAEVRQAGLVGTATGLAKSAIARAEPRARDL 159          
BLAST of CK740221 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.595e-14
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 3
Query:   84 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHL 506
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP+ K       S    A++  Q  ++   TG  ++A+  A   ++ L
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARS---AAAEVRQAGLVGTATGLAKSAIARAEPRARDL 159          
BLAST of CK740221 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.780e-14
Identity = 42/120 (35.00%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  102 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG 461
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134          
The following BLAST results are available for this feature:
BLAST of CK740221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1736_ARATH1.847e-3655.86REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI1.920e-1738.46Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ2.595e-1431.91REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI2.595e-1431.91REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y3550_ARATH5.780e-1435.00REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_6716 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67C02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740221 ID=CK740221; Name=CK740221; organism=Citrus sinensis; type=EST; length=523bp
GTTACATATTATTGAACGCTGCAATCAATAGCAAGCTAATTTCTCGCGAG
ATCTAAAAGCAATATCGAATAATTCATCTTTTGCGCAGTGAAGATATGGA
GACTGAGAGGAAGAAACAGGAACTGAGGCATCTTGGATTTATGAGGATAG
CCGCGATTAAGGCTCTGGTGTGCGTGTCGAGTTTGTACGACTACGCAAAA
CGCAACTCGGGGCCGCTACGCTCGCCGGTTGGGACTGTCGAAAGCGCCGT
GACTGCCGTCGTGGGACCTGTTTATCAGAAATTCAAGGGCGTGCCTGATG
ATCTCCTCGTTTTTCTTGATAAGAAGGTGGATGATGCTTCACGCAAGTTT
GACGAGCACGCTCCCCCTTTGGCCAAGCGGGTTGCCAGCCAAGTACATAG
TCTAATTGAAACAGCATCACAGAAAGCTCAAAAGCTTGTGATTGAGGCCC
AAACCGGGGGGCCTCGAGCAGCTGTCCATTATGCTGCTGCTGAGTCTAAA
CACCTTCTGCTAACAAATTCCGT
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