CK740231

Overview
NameCK740231
Unique NameCK740231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6096 contig Csv1_Contig6096:61..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 332.028 bits (850), Expect = 1.571e-92
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 28.4906 bits (62), Expect = 1.571e-92
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GL+WLSNNIA+
Sbjct:  166 LYEGLEWLSNNIAS 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 330.102 bits (845), Expect = 2.673e-92
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFAKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 29.6462 bits (65), Expect = 2.673e-92
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIA 678
            +Y+GLDWLSNNIA
Sbjct:  166 LYEGLDWLSNNIA 178
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 2.673e-92
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 30.0314 bits (66), Expect = 2.673e-92
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GLDWLSNNIA+
Sbjct:  166 LYEGLDWLSNNIAS 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 329.331 bits (843), Expect = 3.487e-92
Identity = 162/165 (98.18%), Postives = 165/165 (100.00%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 30.0314 bits (66), Expect = 3.487e-92
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GLDWLSNNIA+
Sbjct:  166 LYEGLDWLSNNIAS 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 3.487e-92
Identity = 163/165 (98.79%), Postives = 164/165 (99.39%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSF KLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 30.0314 bits (66), Expect = 3.487e-92
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GLDWLSNNIA+
Sbjct:  166 LYEGLDWLSNNIAS 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 4.549e-92
Identity = 162/165 (98.18%), Postives = 165/165 (100.00%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 29.6462 bits (65), Expect = 4.549e-92
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIA 678
            +Y+GLDWLSNNIA
Sbjct:  166 LYEGLDWLSNNIA 178
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 2.242e-91
Identity = 161/165 (97.58%), Postives = 165/165 (100.00%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGL+FTKLFS+LFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEG
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEG 165

HSP 2 Score: 29.6462 bits (65), Expect = 2.242e-91
Identity = 11/14 (78.57%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GLDWLS+NIAT
Sbjct:  166 LYEGLDWLSSNIAT 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 324.324 bits (830), Expect = 2.453e-90
Identity = 160/165 (96.97%), Postives = 162/165 (98.18%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSFTKL  +LF+KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 28.8758 bits (63), Expect = 2.453e-90
Identity = 10/14 (71.43%), Postives = 14/14 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIAT 681
            +Y+GLDWLSNNI++
Sbjct:  166 LYEGLDWLSNNISS 179
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 323.168 bits (827), Expect = 3.200e-90
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGLSFTKLFS+LFAKKEMRILMVGLDAAGKTTILY+LKLGEIVTTIPTIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 29.6462 bits (65), Expect = 3.200e-90
Identity = 11/13 (84.62%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIA 678
            +Y+GLDWLSNNIA
Sbjct:  166 LYEGLDWLSNNIA 178
[Close]
BLAST of CK740231 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 322.783 bits (826), Expect = 7.105e-90
Identity = 159/165 (96.36%), Postives = 161/165 (97.58%), Query Frame = 2 
Query:  146 MGLSFTKLFSKLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 640
            MGL FTK  S+LF KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEG 165

HSP 2 Score: 28.8758 bits (63), Expect = 7.105e-90
Identity = 10/13 (76.92%), Postives = 13/13 (100.00%), Query Frame = 1 
Query:  640 VYQGLDWLSNNIA 678
            +Y+GLDWLSNN+A
Sbjct:  166 LYEGLDWLSNNLA 178
The following BLAST results are available for this feature:
BLAST of CK740231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF_VIGUN1.571e-9299.39ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF2_ARATH2.673e-9298.79ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_DAUCA2.673e-9298.79ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_ORYSJ3.487e-9298.18ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH3.487e-9298.79ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ORYSJ4.549e-9298.18ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF_MAIZE2.242e-9197.58ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF1_SALBA2.453e-9096.97ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO3.200e-9096.97ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF1_CHLRE7.105e-9096.36ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_6726 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE67D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740231 ID=CK740231; Name=CK740231; organism=Citrus sinensis; type=EST; length=682bp
AATTTTCGAGACCTATAAAATCTAGAAAAAGCCCACCATTTTTGTAGTTT
TATTTTAATTTGAATTTTTGGTTTAAGTGGTGTTCGGCAGCTCCCTCTTG
ATCAGATTAGATTACAAATCCTTTCTCTTCTTTCTGAGAGCAAAAATGGG
GCTGTCTTTCACCAAGCTTTTCAGTAAGTTATTTGCAAAGAAGGAGATGC
GAATTCTTATGGTCGGTCTTGATGCAGCTGGTAAAACCACAATTTTATAT
AAGCTTAAGTTAGGGGAGATCGTTACCACCATCCCCACCATTGGTTTCAA
TGTGGAGACTGTGGAATACAAGAATATTAGCTTCACTGTCTGGGATGTTG
GAGGTCAAGACAAGATTCGACCTTTGTGGAGACACTATTTTCAAAATACA
CAAGGTCTTATCTTTGTGGTTGACAGCAATGATCGTGACCGTGTTGTTGA
GGCTAGAGATGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGGGATG
CTGTGTTGCTTGTGTTTGCAAACAAACAAGATCTTCCAAATGCAATGAAT
GCTGCCGAGATCACTGACAAGCTTGGCCTTCATTCTCTCCGACAACGTCA
CTGGTATATCCAGAGCACTTGTGCCACTTCTGGAGAAGGGTCTACCAGGG
ACTAGACTGGCTCTCAAACAACATTGCTACCA
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