CK740274 | Citrus Genome Database

Overview


Name	CK740274
Unique Name	CK740274
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	515

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig7608	contig	Csv1_Contig7608:493..1005.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_GOSHI (Catalase isozyme 1 OS=Gossypium hirsutum GN=CAT1 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 7.690e-82
Identity = 120/134 (89.55%), Postives = 126/134 (94.03%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIYYS+DKLLQTRIFSY+DTQRHRLGPNYLQLP NAPKCA HNNH++GFMNFMHRDEEI+YFPSRYDPVRHAEM P PP +C GRREKCII KENNFKQPGERYRSWA DRQERFICRWVDALSDPRVTHEI
Sbjct:  330 VPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEINYFPSRYDPVRHAEMFPIPPAVCTGRREKCIIEKENNFKQPGERYRSWAADRQERFICRWVDALSDPRVTHEI 463

HSP 2 Score: 52.373 bits (124), Expect = 7.690e-82
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLNKNIDNFFAENEQLAFCPAIV
Sbjct:  306 LVLNKNIDNFFAENEQLAFCPAIV 329

HSP 3 Score: 26.9498 bits (58), Expect = 7.690e-82
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_SOYBN (Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 2.145e-78
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPG+YYS+DKLLQTR+FSYADTQRHRLGPNYLQLP NAPKCA HNNH+DGFMNFMHRDEE++YFPSRYDPVRHAE  P PP I GG+REKC+I KENNFKQPGERYRSW  DRQERF+ RWVDALSDPRVTHEI
Sbjct:  330 VPGVYYSDDKLLQTRVFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHDGFMNFMHRDEEVNYFPSRYDPVRHAEKVPVPPRILGGKREKCMIEKENNFKQPGERYRSWPSDRQERFVRRWVDALSDPRVTHEI 463

HSP 2 Score: 51.2174 bits (121), Expect = 2.145e-78
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            +VLNKNIDNFFAENEQLAFCPAI+
Sbjct:  306 MVLNKNIDNFFAENEQLAFCPAII 329

HSP 3 Score: 26.9498 bits (58), Expect = 2.145e-78
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA4_SOYBN (Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 4.741e-78
Identity = 113/134 (84.33%), Postives = 123/134 (91.79%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPG+YYS+DK+LQTRIFSYAD+QRHRLGPNYLQLP NAPKCA HNNH++GFMNF+HRDEE++YFPSRYDPVRHAE  P PP IC GRREKC I KENNFKQPGERYRSWAPDRQ+RF  RWVDALSDPRVTHEI
Sbjct:  330 VPGVYYSDDKMLQTRIFSYADSQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFIHRDEEVNYFPSRYDPVRHAERFPIPPAICSGRREKCGIEKENNFKQPGERYRSWAPDRQDRFARRWVDALSDPRVTHEI 463

HSP 2 Score: 52.373 bits (124), Expect = 4.741e-78
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLNKNIDNFFAENEQLAFCPAIV
Sbjct:  306 LVLNKNIDNFFAENEQLAFCPAIV 329

HSP 3 Score: 26.5646 bits (57), Expect = 4.741e-78
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R +WISYWSQA
Sbjct:  464 RSVWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA3_SOYBN (Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.365e-77
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPG+YYS+DKLLQTRIFSYADTQRHRLGPNYLQLP N+PKCA HNNH+DGFMNFMHRDEE++YFPSRYDPVRHAE  P PP   GG+REKC+I KENNFKQPGERYRSW  DRQERF+ RWVDALSDPRVTHEI
Sbjct:  330 VPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANSPKCAHHNNHHDGFMNFMHRDEEVNYFPSRYDPVRHAERVPVPPRTLGGKREKCMIEKENNFKQPGERYRSWPSDRQERFVRRWVDALSDPRVTHEI 463

HSP 2 Score: 51.2174 bits (121), Expect = 1.365e-77
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            +VLNKNIDNFFAENEQLAFCPAI+
Sbjct:  306 MVLNKNIDNFFAENEQLAFCPAII 329

HSP 3 Score: 26.9498 bits (58), Expect = 1.365e-77
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA1_CUCPE (Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 3.017e-77
Identity = 110/134 (82.09%), Postives = 123/134 (91.79%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPG+YYS+DKLLQTRIFSYADTQRHRLGPNYLQLP NAPKCA HNNH++GFMNFMHRDEE++YFPSR+DP RHAE +P PP +C G+RE+CII KENNFK+PGERYRSW PDRQERF+ RWVDALSD RVTHEI
Sbjct:  330 VPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPSRHAERYPHPPAVCSGKRERCIIEKENNFKEPGERYRSWTPDRQERFVRRWVDALSDTRVTHEI 463

HSP 2 Score: 51.2174 bits (121), Expect = 3.017e-77
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            +VLNKNIDNFFAENEQLAFCPAI+
Sbjct:  306 MVLNKNIDNFFAENEQLAFCPAII 329

HSP 3 Score: 26.9498 bits (58), Expect = 3.017e-77
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_SOLAP (Catalase OS=Soldanella alpina PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.930e-77
Identity = 111/136 (81.62%), Postives = 126/136 (92.65%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPG+YYS+DKLLQTRIFSYADTQRHRLGPNYLQLP NAPKCA HNNH++G MNFMHRDEE++YFPSR+DPVRHAE HP PP +  G+R++C+I KENNFKQPGERYR++APDRQERF+CRWVDALSDPRVTHEI
Sbjct:  328 LIVPGVYYSDDKLLQTRIFSYADTQRHRLGPNYLQLPPNAPKCAHHNNHHEGLMNFMHRDEEVNYFPSRFDPVRHAERHPIPPPVLTGKRDRCMIEKENNFKQPGERYRTFAPDRQERFVCRWVDALSDPRVTHEI 463

HSP 2 Score: 51.2174 bits (121), Expect = 3.930e-77
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLNKNIDNFFAENEQLAFCPA++
Sbjct:  306 LVLNKNIDNFFAENEQLAFCPALI 329

HSP 3 Score: 25.7942 bits (55), Expect = 3.930e-77
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYW+QA
Sbjct:  464 RSIWISYWTQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA2_ARATH (Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 5.120e-77
Identity = 109/134 (81.34%), Postives = 126/134 (94.03%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGI+YS+DKLLQTR+FSYADTQRHRLGPNYLQLPVNAPKCA HNNH++GFMNFMHRDEE++YFPSRYD VRHAE +PTPP +C G+RE+CII KENNFK+PGERYR++ P+RQERFI RW+DALSDPR+THEI
Sbjct:  330 VPGIHYSDDKLLQTRVFSYADTQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDQVRHAEKYPTPPAVCSGKRERCIIEKENNFKEPGERYRTFTPERQERFIQRWIDALSDPRITHEI 463

HSP 2 Score: 51.2174 bits (121), Expect = 5.120e-77
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            +VLNKNIDNFFAENEQLAFCPAI+
Sbjct:  306 MVLNKNIDNFFAENEQLAFCPAII 329

HSP 3 Score: 26.9498 bits (58), Expect = 5.120e-77
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA3_NICPL (Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN=CAT3 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.257e-76
Identity = 112/134 (83.58%), Postives = 124/134 (92.54%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPG+Y S+DKLLQTRIFSY+D QRHRLGPNYLQLPVNAPKCA HNNH++GFMNFMHRDEE++YFPSR+DP RHAE +P PP +  G+R+KCII KENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI
Sbjct:  330 VPGVYCSDDKLLQTRIFSYSDAQRHRLGPNYLQLPVNAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRFDPCRHAEQYPIPPCVLTGKRDKCIIEKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 463

HSP 2 Score: 48.1358 bits (113), Expect = 3.257e-76
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLNKNIDNFFAENEQLAF PAIV
Sbjct:  306 LVLNKNIDNFFAENEQLAFWPAIV 329

HSP 3 Score: 25.409 bits (54), Expect = 3.257e-76
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IW SYWSQA
Sbjct:  464 RSIWFSYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA2_GOSHI (Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.527e-76
Identity = 113/136 (83.09%), Postives = 124/136 (91.18%), Query Frame = 1

Query:   70 LWVPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            L VPGIYYS+DKLLQTRIFSY+DTQRHRLGPNYLQLP NAPKCA HNNH++GFMNFMHRDEE++YFPSRYDPVRHAE HP P  +  G+REKCII KENNFKQPGERYRS++ DRQERFI RW+DALSDPRVTHEI
Sbjct:  328 LIVPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHHEGFMNFMHRDEEVNYFPSRYDPVRHAEKHPIPSTVLSGKREKCIIGKENNFKQPGERYRSFSADRQERFINRWIDALSDPRVTHEI 463

HSP 2 Score: 49.2914 bits (116), Expect = 5.527e-76
Identity = 20/24 (83.33%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            +VLNKNIDNFFAENEQLAFCP+++
Sbjct:  306 MVLNKNIDNFFAENEQLAFCPSLI 329

HSP 3 Score: 26.9498 bits (58), Expect = 5.527e-76
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IWISYWSQA
Sbjct:  464 RSIWISYWSQA 474

[Close]

BLAST of CK740274 vs. ExPASy Swiss-Prot
Match: CATA_HELAN (Catalase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 4.579e-75
Identity = 111/134 (82.84%), Postives = 120/134 (89.55%), Query Frame = 1

Query:   76 VPGIYYSNDKLLQTRIFSYADTQRHRLGPNYLQLPVNAPKCAQHNNHYDGFMNFMHRDEEIDYFPSRYDPVRHAEMHPTPPEICGGRREKCIIPKENNFKQPGERYRSWAPDRQERFICRWVDALSDPRVTHEI 477
            VPGIYYS+DKLLQTRIFSY+DTQRHRLGPNYLQLP NAPKCA HNNHYDGFMNFMHRDEEIDYFPSRYDP RHAE +P PP    G+R+KC+I KENNFKQPGERYRS++PDRQERFI R V  LSDPRVTHE+
Sbjct:  330 VPGIYYSDDKLLQTRIFSYSDTQRHRLGPNYLQLPANAPKCAHHNNHYDGFMNFMHRDEEIDYFPSRYDPARHAEQYPIPPVRLSGKRDKCVIEKENNFKQPGERYRSFSPDRQERFINRVVGGLSDPRVTHEV 463

HSP 2 Score: 51.9878 bits (123), Expect = 4.579e-75
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 3

Query:    3 LVLNKNIDNFFAENEQLAFCPAIV 74
            LVLNKNIDNFFAENEQLAFCPAI+
Sbjct:  306 LVLNKNIDNFFAENEQLAFCPAII 329

HSP 3 Score: 26.5646 bits (57), Expect = 4.579e-75
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2

Query:  479 RHIWISYWSQA 511
            R IW+SYWSQA
Sbjct:  464 RSIWVSYWSQA 474

The following BLAST results are available for this feature:

BLAST of CK740274 vs. ExPASy Swiss-Prot

BLAST of CK740274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128


Match Name	E-value	Identity	Description
CATA1_GOSHI	7.690e-82	89.55	Catalase isozyme 1 OS=Gossypium hirsutum GN=CAT1 P...	[more]
CATA1_SOYBN	2.145e-78	85.07	Catalase-1/2 OS=Glycine max GN=CAT1 PE=2 SV=1	[more]
CATA4_SOYBN	4.741e-78	84.33	Catalase-4 OS=Glycine max GN=CAT4 PE=2 SV=1	[more]
CATA3_SOYBN	1.365e-77	84.33	Catalase-3 OS=Glycine max GN=CAT3 PE=2 SV=1	[more]
CATA1_CUCPE	3.017e-77	82.09	Catalase isozyme 1 OS=Cucurbita pepo GN=CAT1 PE=2 ...	[more]
CATA_SOLAP	3.930e-77	81.62	Catalase OS=Soldanella alpina PE=2 SV=1	[more]
CATA2_ARATH	5.120e-77	81.34	Catalase-2 OS=Arabidopsis thaliana GN=CAT2 PE=1 SV...	[more]
CATA3_NICPL	3.257e-76	83.58	Catalase isozyme 3 OS=Nicotiana plumbaginifolia GN...	[more]
CATA2_GOSHI	5.527e-76	83.09	Catalase isozyme 2 OS=Gossypium hirsutum GN=CAT2 P...	[more]
CATA_HELAN	4.579e-75	82.84	Catalase OS=Helianthus annuus PE=2 SV=1	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_6417 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63B09 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK740274 ID=CK740274; Name=CK740274; organism=Citrus sinensis; type=EST; length=515bp
GGTTGGTTTTGAACAAGAACATTGATAACTTCTTTGCAGAGAATGAACAG
CTTGCTTTCTGCCCTGCTATTGTGGGTTCCTGGCATCTACTATTCAAATG
ATAAGTTGCTCCAGACTCGAATCTTCTCCTATGCTGATACTCAGAGGCAC
CGTCTAGGGCCGAACTATCTTCAACTCCCAGTAAATGCACCCAAATGTGC
TCAGCACAACAATCATTATGACGGTTTCATGAATTTCATGCACAGGGATG
AGGAGATCGATTACTTCCCTTCAAGGTATGATCCTGTCCGTCATGCTGAG
ATGCATCCAACTCCTCCTGAAATCTGCGGCGGAAGGCGCGAGAAGTGCAT
AATTCCAAAGGAAAACAACTTCAAACAACCTGGAGAGAGATACCGATCTT
GGGCACCAGACAGGCAAGAGCGATTCATCTGCAGATGGGTTGATGCTTTA
TCTGATCCACGCGTCACCCATGAGATCCCGCCACATATGGATCTCATACT
GGTCTCAGGCTTGCA