CK740318

Overview
NameCK740318
Unique NameCK740318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6486 contig Csv1_Contig6486:567..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 1.500e-83
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+AKKWIPELRHYAPGVPIILVGTKLDLRDDK FLADHPGAV ITTAQGEELRKLIGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 303.908 bits (777), Expect = 3.695e-82
Identity = 149/156 (95.51%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAV I+TAQGEELRKLIGA  YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 3.695e-82
Identity = 147/156 (94.23%), Postives = 152/156 (97.44%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQF  DHPGAV ITT QGEEL+KLIG+P+YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 4.825e-82
Identity = 148/156 (94.87%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAV ITTAQGEELRK IGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.404e-81
Identity = 143/156 (91.67%), Postives = 153/156 (98.08%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYENV+KKW+PELRHYAPGVPIILVGTKLDLRDDKQF A+HPGAV I+TAQGEEL+KLIGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKLDLRDDKQFFAEHPGAVPISTAQGEELKKLIGAPAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.834e-81
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAV ITTAQGEELRKLIGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKLIGAPAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 2.395e-81
Identity = 146/156 (93.59%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPIILVGTKLDLRDDKQF  DHPGAV ITTAQGEELRKLI AP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKLINAPAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.085e-81
Identity = 144/156 (92.31%), Postives = 152/156 (97.44%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAV ITTAQGEEL+KLIGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 5.335e-81
Identity = 144/156 (92.31%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAV ITTAQGEELRK IGAP YI
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELRKQIGAPTYI 156
[Close]
BLAST of CK740318 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.188e-80
Identity = 143/156 (91.67%), Postives = 151/156 (96.79%), Query Frame = 3 
Query:  114 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFLADHPGAVAITTAQGEELRKLIGAPVYI 581
            MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENV+KKWIPEL+HYAPGVPI+LVGTKLDLRDDKQF  DHPGAV ITT QGEEL+KLIGAP YI
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYI 156
The following BLAST results are available for this feature:
BLAST of CK740318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC1_LOTJA1.500e-8396.15Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC5_ORYSJ3.695e-8295.51Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC5_ARATH3.695e-8294.23Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC6_ORYSJ4.825e-8294.87Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC3_ARATH1.404e-8191.67Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAC1_BETVU1.834e-8192.95Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RHO1_PEA2.395e-8193.59Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC1_ARATH4.085e-8192.31Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC11_ARATH5.335e-8192.31Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC6_ARATH1.188e-8091.67Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_6462 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone RSE63G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK740318 ID=CK740318; Name=CK740318; organism=Citrus sinensis; type=EST; length=582bp
TCTGTCTCTGCTCTTACAAAAATGCCGTACTTGTTCTGAGTTAGGGTTCT
GTAGCTGTAAAAACAAAGAAAGACGAGTAATAAAGATACTGTCTTAAGTG
CACGTGGCGCGAGATGAGTGCATCGAGGTTCATAAAGTGCGTGACGGTCG
GTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTACACCAGCAAC
ACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATTTCAGTGCAAA
TGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGGGACACTGCAG
GCCAGGAAGATTACAATAGACTAAGACCATTGAGCTACCGCGGGGCAGAT
GTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCTATGAAAATGT
TGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCTGGTGTTCCAA
TAATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAAGCAGTTCCTT
GCAGATCACCCTGGTGCAGTGGCAATTACCACGGCCCAAGGGGAGGAATT
GAGAAAGTTGATAGGTGCTCCTGTTTACATTG
back to top