CK932652

Overview
NameCK932652
Unique NameCK932652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE1_ARATH (Coatomer subunit epsilon-1 OS=Arabidopsis thaliana GN=At1g30630 PE=2 SV=1)

HSP 1 Score: 402.519 bits (1033), Expect = 1.300e-111
Identity = 194/227 (85.46%), Postives = 217/227 (95.59%), Query Frame = 1
Query:   91 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            PDHLFNLRN+FYLGAYQAAINNS++ NL  +D VERDCLV+R+YIALGSYQLVISEIDE+AATPLQAVKLLA+YLSSP+NKESTISSL+EWL+DP +G+NA +RLIAG IFMHEEDYNEALKHT++GGTM+LHALNVQIF+KMHRSD+AE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIFQDFSEKYPMT LILNGKAVCCMHMGNF+EAE LLL+AL
Sbjct:    7 PDHLFNLRNHFYLGAYQAAINNSEIPNLSQEDIVERDCLVHRAYIALGSYQLVISEIDEAAATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEALKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFQDFSEKYPMTSLILNGKAVCCMHMGNFEEAETLLLEAL 233          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE2_ARATH (Coatomer subunit epsilon-2 OS=Arabidopsis thaliana GN=At2g34840 PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 4.939e-111
Identity = 196/227 (86.34%), Postives = 215/227 (94.71%), Query Frame = 1
Query:   91 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            PDHLFNLRNNFYLGAYQ AINNS++ NL P++AVERDCLV+RSYIALGSYQLVISEIDESAATPLQAVKLLA+YLS+P NKESTISSLKEWL+D  IG+N TLRLIAGIIFMHEEDYNE LKHT+AGGTM+L+ALNVQIF+KMHR++YAE+QLR MQQIDEDHTLTQLA+AWLNLAVGGSKIQEAYLIF+DFSEKYPMT LILNGKAVCCM MGNFDEAE LLL+AL
Sbjct:    8 PDHLFNLRNNFYLGAYQTAINNSEIANLSPENAVERDCLVFRSYIALGSYQLVISEIDESAATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNETLKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPMTCLILNGKAVCCMQMGNFDEAETLLLEAL 234          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE1_ORYSJ (Coatomer subunit epsilon-1 OS=Oryza sativa subsp. japonica GN=COPE1 PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.548e-101
Identity = 183/227 (80.62%), Postives = 205/227 (90.31%), Query Frame = 1
Query:   91 PDHLFNLRNNFYLGAYQAAINNSDLTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            PD LFNLRN FYLGAYQAAINNSD+  L  D A ERD +V+RSY+ALGSYQLVISEID SAAT LQAVKLLALYLS   +KES I SLKEWLSD A+GSN  LRLIAGIIFMHE+DY EALKHT++GGT++LHALNVQIF+KMHRSDYAE+QL+ MQQIDEDHTLTQLANAWL++AVGGSKI+EAYLIFQDF+EKYPMTG++LNGKAVCCMHMG+FDEAE LLL+AL
Sbjct:    4 PDLLFNLRNLFYLGAYQAAINNSDVPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSSAATSLQAVKLLALYLSG--DKESAIVSLKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEALKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGSKIREAYLIFQDFAEKYPMTGMVLNGKAVCCMHMGSFDEAETLLLEAL 228          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSJ (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. japonica GN=Os04g0644700 PE=3 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.268e-82
Identity = 157/232 (67.67%), Postives = 183/232 (78.88%), Query Frame = 1
Query:   91 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            PDHLF LRN+FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LL +YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEGLLL++L
Sbjct:    7 PDHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESL 238          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE2_ORYSI (Coatomer subunit epsilon-2 OS=Oryza sativa subsp. indica GN=H0413E07.10 PE=3 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 3.688e-82
Identity = 157/232 (67.67%), Postives = 183/232 (78.88%), Query Frame = 1
Query:   91 PDHLFNLRNNFYLGAYQAAINNSDL----TNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSS-PDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            PDHLF LR +FY+GAYQA I           L PD   ERD L+YRSYIA+GS+QLVI EI   AATPLQAV+LLA+YLS     KES I  L E L+D A+GSN  LRL+AG + MHE DY  ALKHTN+GGTMEL A+NVQI L+MHRSD+AE+QLR MQQ+DEDHTLTQLANAW++L +GGSKIQEA+LIFQD SEKYP T LILNGKA+C MHMGNF++AEGLLL++L
Sbjct:    7 PDHLFGLRYSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEIGPGAATPLQAVRLLAVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERDYAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLVMGGSKIQEAHLIFQDLSEKYPATCLILNGKALCLMHMGNFEDAEGLLLESL 238          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_CHICK (Coatomer subunit epsilon OS=Gallus gallus GN=COPE PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.116e-49
Identity = 98/227 (43.17%), Postives = 154/227 (67.84%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSD-LTNLPPDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N+FY+GAYQAAIN +  +    P+   ERD  ++RSYIA   Y +V+ EI  +A+  LQAV++ A YLS+   +++ ++ L + ++     +N T  L+A  I+ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ+ DED TLTQLA AW+NLA+GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G +D+AEG+L +AL
Sbjct:   17 DELFDVKNSFYIGAYQAAINEAQRIKPSNPEKETERDVFLFRSYIAQRKYGVVLDEIKANASPELQAVRMFAEYLSNESQRDAIVADLDKKMAKSVDVANTTFLLMAASIYFHDKNPDAALRTLHQGESLECMAMMIQILLKLDRLDLARKELKKMQEQDEDATLTQLATAWVNLAIGGEKLQDAYYIFQEMADKCSSTLLLLNGQAACYMAQGKWDDAEGVLQEAL 243          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_CRIGR (Coatomer subunit epsilon OS=Cricetulus griseus GN=COPE PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.324e-47
Identity = 98/227 (43.17%), Postives = 148/227 (65.20%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N FY+G+YQ  IN +    L  PD  VERD  +YR+YIA   Y +V+ EI  S+A  LQAV++ A YL++ + +++ +  L   +S     +N T  L+A  ++ H+++ + AL+  + G ++E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG+L +AL
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPDREVERDVFLYRAYIAQRKYGVVLDEIKPSSAPELQAVRMFADYLATENRRDAIVVELDREMSRSVDVTNTTFLLMAASVYFHDQNPDAALRTLHQGDSLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEAL 243          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_PONAB (Coatomer subunit epsilon OS=Pongo abelii GN=COPE PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.729e-47
Identity = 97/227 (42.73%), Postives = 149/227 (65.64%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEGLL +AL
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPETDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEAL 243          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_MOUSE (Coatomer subunit epsilon OS=Mus musculus GN=Cope PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 1.729e-47
Identity = 99/227 (43.61%), Postives = 147/227 (64.76%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   Y +V+ EI  S+A  LQAV++ A YL+S + ++S +  L   +S     +N T  L+A  I+ H+++ + AL+  + G  +E  A+ +QI LK+ R D A ++L+ MQ  DED TLTQLA AW+NLAVGG K+QEAY IFQ+ ++K   T L+LNG+A C    G ++ AEG+L +AL
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPEREVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASENQRDSIVLELDREMSRSVDVTNTTFLLMAASIYFHDQNPDAALRTLHQGDGLECMAMTIQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKCSPTLLLLNGQAACHSAQGRWETAEGVLQEAL 243          
BLAST of CK932652 vs. ExPASy Swiss-Prot
Match: COPE_HUMAN (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 189.119 bits (479), Expect = 2.259e-47
Identity = 97/227 (42.73%), Postives = 149/227 (65.64%), Query Frame = 1
Query:   94 DHLFNLRNNFYLGAYQAAINNSDLTNLP-PDDAVERDCLVYRSYIALGSYQLVISEIDESAATPLQAVKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGLLLDAL 771
            D LF+++N FY+G+YQ  IN +    L  P+  VERD  +YR+Y+A   + +V+ EI  S+A  LQAV++ A YL+    ++S ++ L   +S     +N T  L+A  I++H+++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ +DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEGLL +AL
Sbjct:   17 DELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEAL 243          
The following BLAST results are available for this feature:
BLAST of CK932652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE1_ARATH1.300e-11185.46Coatomer subunit epsilon-1 OS=Arabidopsis thaliana... [more]
COPE2_ARATH4.939e-11186.34Coatomer subunit epsilon-2 OS=Arabidopsis thaliana... [more]
COPE1_ORYSJ3.548e-10180.62Coatomer subunit epsilon-1 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSJ1.268e-8267.67Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE2_ORYSI3.688e-8267.67Coatomer subunit epsilon-2 OS=Oryza sativa subsp. ... [more]
COPE_CHICK4.116e-4943.17Coatomer subunit epsilon OS=Gallus gallus GN=COPE ... [more]
COPE_CRIGR1.324e-4743.17Coatomer subunit epsilon OS=Cricetulus griseus GN=... [more]
COPE_PONAB1.729e-4742.73Coatomer subunit epsilon OS=Pongo abelii GN=COPE P... [more]
COPE_MOUSE1.729e-4743.61Coatomer subunit epsilon OS=Mus musculus GN=Cope P... [more]
COPE_HUMAN2.259e-4742.73Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_C08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932652 ID=CK932652; Name=CK932652; organism=Citrus sinensis; type=EST; length=773bp
GGGGGGAGTTGAAGAAGGGATCCAATCTAAATCAAAGAAGCAATCGATCA
AGAAGCGAAAAAGGAATAAAGAATGGCAGCGGCAGCAGCACCAGATCACT
TGTTCAATCTGAGAAACAACTTCTACTTGGGGGCGTATCAGGCCGCTATC
AACAACAGCGACCTCACCAATCTTCCACCAGACGACGCCGTTGAGCGTGA
CTGCCTCGTCTACCGCTCTTACATTGCCCTTGGCAGTTACCAGCTTGTGA
TCAGTGAGATCGATGAGTCGGCTGCTACACCTCTCCAAGCCGTGAAGTTG
CTTGCTCTCTATCTCTCTAGCCCTGACAACAAGGAATCAACAATTTCAAG
TTTAAAAGAGTGGTTGTCAGATCCAGCCATTGGGAGCAATGCGACATTAC
GCTTGATTGCTGGTATCATATTCATGCATGAAGAGGATTATAATGAGGCA
CTCAAACACACCAATGCTGGAGGGACCATGGAATTACATGCATTGAATGT
CCAAATATTCCTTAAGATGCACAGGTCTGACTATGCAGAGAGACAGCTGA
GGGCCATGCAACAGATTGATGAGGACCACACCCTAACTCAACTTGCAAAT
GCTTGGTTGAATTTGGCAGTGGGTGGTTCCAAGATACAGGAAGCATATCT
CATCTTTCAAGATTTCTCTGAGAAGTATCCAATGACAGGGTTGATCTTGA
ATGGAAAGGCTGTTTGCTGCATGCATATGGGGAACTTTGATGAAGCTGAA
GGATTGTTGCTTGATGCACTCAA
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