CK932658

Overview
NameCK932658
Unique NameCK932658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_ARATH (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=ALDH5F1 PE=1 SV=2)

HSP 1 Score: 293.508 bits (750), Expect = 8.982e-79
Identity = 142/188 (75.53%), Postives = 160/188 (85.11%), Query Frame = 3
Query:  234 QVHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            +V+NPATGE+IA+V+CMG KET DAI+S+++AF SWS+LTA ERSK LR+WYDLL+AHKEELGQLITLEQGKPLKEA+GEV YGA FIE+YAEEAKRVYG+IIP  L DRRL VLKQPVGV GAITPWNFPLAMITRKVGPALA GCTVVVKPSE TP             G+PPG +NVVMGNAP+I
Sbjct:   71 KVNNPATGEIIADVACMGTKETNDAIASSYEAFTSWSRLTAGERSKVLRRWYDLLIAHKEELGQLITLEQGKPLKEAIGEVAYGASFIEYYAEEAKRVYGDIIPPNLSDRRLLVLKQPVGVVGAITPWNFPLAMITRKVGPALASGCTVVVKPSELTPLTALAAAELALQAGVPPGALNVVMGNAPEI 258          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_ORYSJ (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Oryza sativa subsp. japonica GN=ALDH5F1 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.117e-76
Identity = 137/188 (72.87%), Postives = 154/188 (81.91%), Query Frame = 3
Query:  234 QVHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            +V NPATGE +ANVSCMG KET DAI+SA   F SWSKLTA ERSK LRKW+DL+++HKEEL  L+TLEQGKP+KEA+ EV YGA FIE++AEEAKR+YG+IIP TL DRRL VLKQPVGV GA+TPWNFPLAMITRKVGPALACGCTVVVKPSEFTP             GIP G +NVVMGNAP+I
Sbjct:   72 EVQNPATGETLANVSCMGSKETSDAIASAHSTFYSWSKLTANERSKALRKWHDLIISHKEELALLMTLEQGKPMKEALVEVTYGASFIEYFAEEAKRIYGDIIPPTLSDRRLLVLKQPVGVVGAVTPWNFPLAMITRKVGPALACGCTVVVKPSEFTPLTALAAADLALQAGIPAGAINVVMGNAPEI 259          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_RAT (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Aldh5a1 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.487e-52
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 3
Query:  216 TPAFSRQVHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            TPA +  V++PA+G  +  V+  G  E + A+ +A+DAF+SW +++  ERS  LRKWYDL++ +K+EL ++IT E GKPLKEA GE+ Y A F+E+++EEA+RVYG+II  +  D+R  VLKQPVGVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIPPGV NV+
Sbjct:   60 TPA-TFPVYDPASGAKLGTVADCGVPEARAAVRAAYDAFSSWKEISVKERSSLLRKWYDLMIQNKDELAKIITAESGKPLKEAQGEILYSAFFLEWFSEEARRVYGDIIYTSAKDKRGLVLKQPVGVASIITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALALAQLANQAGIPPGVYNVI 245          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: GABD_ECOLI (Succinate-semialdehyde dehydrogenase [NADP+] OS=Escherichia coli (strain K12) GN=gabD PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.487e-52
Identity = 99/184 (53.80%), Postives = 127/184 (69.02%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNA 788
            V NPA G+ + +V  MG  ET+ AI +A  A  +W  LTA ER+  LR W++L+M H+++L +L+TLEQGKPL EA GE+ Y A FIE++AEE KR+YG+ IP    D+RL V+KQP+GV  AITPWNFP AMITRK GPALA GCT+V+KP+  TP             G+P GV NVV G+A
Sbjct:   30 VTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSA 213          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_MOUSE (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh5a1 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.765e-50
Identity = 98/180 (54.44%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            V++PA+G  +  V+  G  E + A+ +A+DAFNSW  ++  ERS  LRKWYDL++ +K++L ++IT E GKPLKEA GE+ Y A F+E+++EEA+R+YG+II  +  D+R  VLKQPVGVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIP GV NV+
Sbjct:   66 VYDPASGAKLGTVADCGVPEARAAVRAAYDAFNSWKGVSVKERSLLLRKWYDLMIQNKDDLAKIITAESGKPLKEAQGEILYSALFLEWFSEEARRIYGDIIYTSAKDKRGLVLKQPVGVAAIITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPYSALALAQLANQAGIPAGVYNVI 245          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: GABD_BACSU (Succinate-semialdehyde dehydrogenase [NADP+] OS=Bacillus subtilis GN=gabD PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.708e-50
Identity = 97/187 (51.87%), Postives = 124/187 (66.31%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVVMGNAPDI 797
            V+NPATGE I  +      E ++AI  +  AF +WSK +A ER+  L+KWY+L++ HKEEL  LIT E GKP +EAVGEV YGA +IE++AEEAKRVYG  +PA    +R+ V +QPVG   AITPWNFP AMITRK  PALA GCT ++KP+  TP             GIP  V+ VV+G+  +I
Sbjct:    7 VYNPATGEEIKTIPQQSATEVEEAIERSHQAFKTWSKTSANERTSLLKKWYELIVEHKEELADLITKENGKPYQEAVGEVLYGAGYIEWFAEEAKRVYGRTVPAPTTGKRIVVTRQPVGPVAAITPWNFPNAMITRKAAPALAAGCTFIIKPAPDTPLSAYELARLAYEAGIPKDVLQVVIGDGEEI 193          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_HYLLA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Hylobates lar GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.761e-50
Identity = 97/180 (53.89%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            V +PA+G  +  V+  G +E + A+ +A++AF SW +++A ERS  LRKWY+L++ +K++L ++IT E GKPLKEA GE+ Y A F+E+++EEA+RVYG+II     DRR  VLKQP+GVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIP GV NV+
Sbjct:   78 VQDPASGAALGMVADCGVREARAAVRAAYEAFCSWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIYTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVI 257          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_PONPY (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pongo pygmaeus GN=ALDH5A1 PE=2 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.494e-49
Identity = 97/180 (53.89%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            V +PA+G  +  V+  G +E + A+ +A++AF SW +++A ERS  LRKWY L++ +K++L ++IT E GKPLKEA GE+ Y A F+E+++EEA+RVYG+II     DRR  VLKQP+GVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIP GV NV+
Sbjct:   78 VQDPASGAALGMVADCGVREARAAVRAAYEAFCSWREVSAKERSSLLRKWYXLMIXNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIYTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVI 257          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_HUMAN (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH5A1 PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.549e-49
Identity = 96/180 (53.33%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            V +PA+G  +  V+  G +E + A+ +A++AF  W +++A ERS  LRKWY+L++ +K++L ++IT E GKPLKEA GE+ Y A F+E+++EEA+RVYG+II     DRR  VLKQP+GVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIP GV NV+
Sbjct:   78 VQDPASGAALGMVADCGVREARAAVRAAYEAFCRWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIHTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVI 257          
BLAST of CK932658 vs. ExPASy Swiss-Prot
Match: SSDH_PANPA (Succinate-semialdehyde dehydrogenase, mitochondrial OS=Pan paniscus GN=ALDH5A1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.329e-49
Identity = 96/180 (53.33%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  237 VHNPATGEVIANVSCMGGKETKDAISSAFDAFNSWSKLTAAERSKGLRKWYDLLMAHKEELGQLITLEQGKPLKEAVGEVDYGAKFIEFYAEEAKRVYGEIIPATLPDRRLFVLKQPVGVAGAITPWNFPLAMITRKVGPALACGCTVVVKPSEFTPXXXXXXXXXXXXXGIPPGVVNVV 776
            V +PA+G  +  V+  G +E + A+ +A++AF  W +++A ERS  LRKWY+L++ +K++L ++IT E GKPLKEA GE+ Y A F+E+++EEA+RVYG+II     DRR  VLKQP+GVA  ITPWNFP AMITRKVG ALA GCTVVVKP+E TP             GIP GV NV+
Sbjct:   78 VQDPASGAALGMVADCGVREARAAVRAAYEAFCCWREVSAKERSSLLRKWYNLMIQNKDDLARIITAESGKPLKEAHGEILYSAFFLEWFSEEARRVYGDIIYTPAKDRRALVLKQPIGVAAVITPWNFPSAMITRKVGAALAAGCTVVVKPAEDTPFSALALAELASQAGIPSGVYNVI 257          
The following BLAST results are available for this feature:
BLAST of CK932658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SSDH_ARATH8.982e-7975.53Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_ORYSJ7.117e-7672.87Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_RAT5.487e-5255.08Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_ECOLI5.487e-5253.80Succinate-semialdehyde dehydrogenase [NADP+] OS=Es... [more]
SSDH_MOUSE1.765e-5054.44Succinate-semialdehyde dehydrogenase, mitochondria... [more]
GABD_BACSU6.708e-5051.87Succinate-semialdehyde dehydrogenase [NADP+] OS=Ba... [more]
SSDH_HYLLA8.761e-5053.89Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PONPY1.494e-4953.89Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_HUMAN2.549e-4953.33Succinate-semialdehyde dehydrogenase, mitochondria... [more]
SSDH_PANPA3.329e-4953.33Succinate-semialdehyde dehydrogenase, mitochondria... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004531_B06 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0002_IIIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932658 ID=CK932658; Name=CK932658; organism=Citrus sinensis; type=EST; length=797bp
GCGGGGGTATTTACAAACAAAAATCCTGCNNNTTTTGGGATCAAAGATCC
CAAATCGAATCTTTCATTTCAGTTCAGTTGTCATCACGCGAAACAGTAAT
AAAAGAGTAGTACACCAAACAAAGGACGAAGATGACGTTGAGTGGAGTGG
CACGTGTGGCATTTGTGGGCTCTCGCAGGATTTTCGCATCACATTTGCCA
AGCATGCAGAGCTACACTCCTGCTTTCTCTCGCCAGGTCCACAATCCAGC
AACTGGCGAAGTGATAGCAAATGTATCGTGTATGGGAGGAAAGGAAACAA
AAGATGCTATATCTTCGGCTTTTGATGCGTTTAATTCTTGGAGCAAGCTC
ACTGCTGCTGAGAGAAGCAAGGGTTTGCGGAAATGGTATGATCTACTGAT
GGCTCACAAAGAAGAGCTTGGCCAACTAATAACATTGGAGCAGGGGAAAC
CTCTTAAAGAAGCTGTCGGTGAGGTTGACTATGGAGCCAAGTTTATTGAG
TTCTATGCAGAGGAGGCGAAACGTGTATATGGTGAAATAATTCCCGCAAC
TCTGCCTGATCGCCGGTTATTTGTTCTAAAGCAGCCTGTAGGTGTTGCTG
GTGCAATTACACCATGGAACTTTCCCTTGGCTATGATTACCCGAAAGGTT
GGTCCGGCCCTTGCTTGTGGTTGTACAGTGGTTGTAAAACCCTCTGAATT
TACACCTCTCACTGCTTTAGCAGCAGCTGAGCTCGCCTTGCAGGCTGGAA
TCCCACCGGGTGTTGTGAATGTGGTTATGGGGAATGCTCCTGATATT
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