CK932659
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3A_ARATH (SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.525e-60 Identity = 85/153 (55.56%), Postives = 102/153 (66.67%), Query Frame = 2 Query: 74 MPQYDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGAVXXXXXXXXXXXXXXXTELKNQVKIKEGAPNGVRVVALPNSLKPISVP 532 M DP+ E ELYTIP+ SSWF WDDIHE ER EFF SSI+RTPK+YKEYRDF+INK+RE+ RRLTFT VRK LVGDV+LL KVF L++WGLINF + + KI++G P G+RV A PNSL+PI+ P Sbjct: 1 MEATDPSA--EIELYTIPAQSSWFLWDDIHEIERREFAEFFTESSITRTPKVYKEYRDFIINKFREDTCRRLTFTSVRKFLVGDVNLLQKVFLFLEKWGLINFSSSLKKNDHLLSV---------DNAKIEQGTPAGIRVTATPNSLRPITAP 142 HSP 2 Score: 87.4261 bits (215), Expect = 1.525e-60 Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 576 QVRPGFKLPPLTSYLDVFGDLVKLKG-FKCGSCGEQCNSGCYEYSKGSFVICEKCFKNGNYGEDKSKDDFRFSDLGGNS 809 +V G K+PPLTSY DVF DL K C CGE+C+S Y+++KG ICEKCFKNGNYGE+ + DDF+ L GNS Sbjct: 148 RVETGIKVPPLTSYSDVFSDLKKPDHVLVCAHCGERCDSPFYQHNKGIVNICEKCFKNGNYGENNTADDFK---LIGNS 223
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SSR2_SCHPO (SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe GN=ssr2 PE=1 SV=3) HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20 Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = 2 Query: 122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 +PS++ WF IH+ ER + EFF+G S +TP IYK+YRDFMIN YR EP+ LT T R++LVGDV + +V L++WGLIN+ Sbjct: 20 VPSYAGWFDMSKIHDIERRSNPEFFNGKSPLKTPSIYKDYRDFMINSYRLEPNEYLTVTACRRNLVGDVCAIIRVHAFLEQWGLINY 106
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3B_ARATH (SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.927e-20 Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 2 Query: 89 PNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINFGA 388 P++ + + +PS+SSWF W DI++ E +L EFFD S S+ PK Y R+ +I +YR++ R+++FT VR++LV DV + +VF LD WGLIN+ + Sbjct: 39 PSSSSDIDNIHVPSYSSWFSWTDINDCEVRSLPEFFDSRSSSKNPKFYLYLRNSIIKQYRDDHPRKISFTDVRRTLVSDVVSIRRVFDFLDSWGLINYNS 138
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC2_MOUSE (SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19 Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 83 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 ++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T R++L GDV + +V L++WGLIN+ Sbjct: 413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC2_HUMAN (SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19 Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 2 Query: 83 YDPNTKPEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 ++ N + IPS+++WF ++ +H ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T R++L GDV + +V L++WGLIN+ Sbjct: 413 HEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINY 512
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SSR1_SCHPO (SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe GN=ssr1 PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 7.114e-19 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 2 Query: 122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 +P + WF + +HE E+ EFFDG + S+TP++YKEYRDFMI+ +R LTFT R++L GDV + +V R L++WGLIN+ Sbjct: 54 VPEWAQWFDFSKVHEIEKKQNPEFFDGKNTSKTPEVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCAVLRVHRFLEQWGLINY 140
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC1_MOUSE (SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 9.291e-19 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 2 Query: 122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T R++L GDV + +V L++WGL+N+ Sbjct: 450 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 536
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SMRC1_HUMAN (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 9.291e-19 Identity = 43/87 (49.43%), Postives = 61/87 (70.11%), Query Frame = 2 Query: 122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 IPS++SWF ++ IH ER AL EFF+G + S+TP+IY YR+FMI+ YR P LT T R++L GDV + +V L++WGL+N+ Sbjct: 451 IPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNY 537
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: SWI3_YEAST (SWI/SNF complex subunit SWI3 OS=Saccharomyces cerevisiae GN=SWI3 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16 Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 2 Query: 101 PEFELYTIPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 P+ IPS+S WF + IH E +L EFF S+TP++Y YR+FM+N YR P+ + T R+++ GD + L ++ + L +WGLIN+ Sbjct: 300 PQAHEIVIPSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLINY 393
BLAST of CK932659 vs. ExPASy Swiss-Prot
Match: RSC8_YEAST (Chromatin structure-remodeling complex protein RSC8 OS=Saccharomyces cerevisiae GN=RSC8 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16 Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 2 Query: 122 IPSHSSWFRWDDIHETERTALKEFFDGSSISRTPKIYKEYRDFMINKYREEPSRRLTFTQVRKSLVGDVSLLHKVFRLLDEWGLINF 382 IPS +SWF IHE E+ + +FF+ SS +TPK YK+ R+F+IN YR P LT T VR+++ DV+ + K+ L++WGLIN+ Sbjct: 82 IPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKDTRNFIINTYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINY 168 The following BLAST results are available for this feature:
BLAST of CK932659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932659 ID=CK932659; Name=CK932659; organism=Citrus sinensis; type=EST; length=874bpback to top |