CK932734

Overview
NameCK932734
Unique NameCK932734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.124e-58
Identity = 120/201 (59.70%), Postives = 152/201 (75.62%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 644
            IEN TNRQVT+SKRRNGLFKKA ELT+LCDAKVSI++ SST K HE+ISPS TTKQL DLYQKT+ +DLW+SHYEKM E L  +++VNR L+K+IRQRMGESLNDL  E+L  L +++ + LK+I E K +V+  QI TFK+KVR V++ +++L   F  +A++EDP   Y LV+     +S  GF N G  I ALRLQPN
Sbjct:   11 IENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVRNVEEIHRNLLLEF--DARQEDP---YGLVEQEGDYNSVLGFPNGGHRILALRLQPN 206          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.892e-57
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 644
            IEN TNRQVT+SKRRNGLFKKA EL++LCDAKVSI++ SST K HEYISP+T TKQL D YQK + +DLWSSHYEKM E+L  + +VNR L+++IRQRMGESLNDL  E++  L +D+ + LK+I E K +V++ QI+T K+KVR V++ +++L   F  +A+ EDPH  + LVDN    +S  GF N GP I ALRL  N
Sbjct:   11 IENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEF--DARREDPH--FGLVDNEGDYNSVLGFPNGGPRIIALRLPTN 207          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.232e-47
Identity = 101/201 (50.25%), Postives = 137/201 (68.16%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 644
            IEN TNRQVT+SKRRNGLFKKA ELT+LCDA+VSI++ SS+ K HEYISP+TTTK+++DLYQ    +D+W++ YE+M E    + + NR L+ QI+QR+GE L++L ++EL  LE ++ +  K++ E K + L  QI T K+K +  Q   K+L     + A  EDPH  Y LVDNG   DS  G+Q EG   +ALR   N
Sbjct:   11 IENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTISDVDVWATQYERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNLIHELELRA--EDPH--YGLVDNGGDYDSVLGYQIEGSRAYALRFHQN 207          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 3.971e-37
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDN-GEHCDSDFGFQNEGPGIFALRLQPN 644
            IENATNRQVT+SKRR G+ KKARELT+LCDA+V+I++ SST K HE+ SPST  K + D YQ+ +   LW   YE M   L  ++ +NR L+ +IRQRMGE L+ L  +EL GLEQ++   LK +   K  V+  Q  T+K+KV+   +  ++LQ         E+P + +  VDN G   D   G       +FA R+ P+
Sbjct:   11 IENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQAIGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRHRKYHVITTQTETYKKKVKHSYEAYETLQQEL---GLREEPAFGF--VDNTGGGWDGGAG-AGAAADMFAFRVVPS 206          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.561e-33
Identity = 70/154 (45.45%), Postives = 104/154 (67.53%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 503
            IEN TNRQVTFSKRRNG+ KKA+ELT+LCDAKVS+L+ SST K H Y+SP  + K++ D YQK   +DLW   +E+M E    V ++N +L+++I +RMG  L  LTL EL+ L+Q++ + +  I   K   +  Q  T ++K++ +++ +  L
Sbjct:   11 IENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 8.866e-29
Identity = 75/202 (37.13%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKE-EDPHYEYELVDNGEH-CDSDFGFQNEGPGIFALRLQP 641
            IEN++NRQVT+SKRRNG+ KKA+E+T+LCDAKVS++I  ++ K HEY SPSTT   +LD YQKT    LW + +E +   +  +++ N  ++ ++R   GE +N L  +EL  LE+ + +GL  I   + ++L       ++  + +++E+K LQ  + ++ KE         +++   H  D D+ +Q      FALR+QP
Sbjct:   11 IENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQSEIL----RMVRKNDQILEEEHKQLQ--YALHQKEMAAMGGNMRMIEEVYHQRDRDYEYQQMP---FALRVQP 203          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: GLOB_ANTMA (Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.767e-25
Identity = 70/204 (34.31%), Postives = 114/204 (55.88%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPH----YEYELVDNGEHCDSDFGFQNEGPGIFALRLQP 641
            IEN++NRQVT+SKRRNG+ KKA+E+++LCDA VS++I +S+ K HE+ SPSTT   +LD Y K     LW   +E +   +  V++ N  ++ ++R   GE +  L  +EL  LE  + +G   +   + +     +   ++    V++EN+SLQ  F +     DP      E + V +  H  +   ++ + P  FA R+QP
Sbjct:   11 IENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSPSTTLVDMLDHYHKLSGKRLWDPKHEHLDNEINRVKKENDSMQIELRHLKGEDITTLNYKELMVLEDALENGTSALKNKQMEF----VRMMRKHNEMVEEENQSLQ--FKLRQMHLDPMNDNVMESQAVYDHHHHQNIADYEAQMP--FAFRVQP 206          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.034e-24
Identity = 72/210 (34.29%), Postives = 113/210 (53.81%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL------QDGFIINAKEEDPHYEYELV----DNGEHCDSDFGFQNEGPGIFALRLQP 641
            IEN TNRQVTFSKRR GL KKA EL++LCDA++ ++I SS+ K  EY S S++ K++++ YQK     +     + +   +  ++  N  L+  IR+ MGE L  LT+ EL  L Q +      +   K+Q++ +Q+   +RK R ++ +N  L      Q   +   +E  P  E+ +     DN     ++ G  + G  + A RLQP
Sbjct:   11 IENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSGARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQE--PLLEFGVFCPPPDNKTAAAANAGPLHLGHHLPAFRLQP 218          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: M17_MAIZE (MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 8.587e-24
Identity = 61/160 (38.12%), Postives = 101/160 (63.12%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRI------LKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 503
            IEN+TNRQVTFSKRR GL KKA EL +LCDA+V ++I SST K  EY SP+ + ++L++ YQ        +SH+E++  +   + ++ R+      L+  IR+  G+ L+ LTL++++ LEQ +   +  +   K Q+L +Q++  +RK + ++ +N  L
Sbjct:   11 IENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPACSLRELIEQYQHAT-----NSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFL 165          
BLAST of CK932734 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.263e-23
Identity = 66/201 (32.84%), Postives = 112/201 (55.72%), Query Frame = 3
Query:   42 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRIDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYEYELVDNGEHCDSDFGFQNEGPGIFALRLQPN 644
            IEN+TNRQVTFSKRR+G+ KKARE+++LCDA+V ++I SS  K ++Y SP T+  ++L+ YQ      LW   ++ +   +  +++ N  ++ ++R   GE LN L  +EL  +E+ + +G+  +++       R + T K     ++ ENK L   F ++ ++         ++ G H D DF  Q         R+QP+
Sbjct:   11 IENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGIVNVNDKLMDHWERHVRTDKM----LEDENKLL--AFKLHQQDIALSGSMRDLELGYHPDRDFAAQMP----ITFRVQPS 201          
The following BLAST results are available for this feature:
BLAST of CK932734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 96
Match NameE-valueIdentityDescription
MADS1_PETHY3.124e-5859.70Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA5.892e-5758.21Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
AP3_ARATH4.232e-4750.25Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
MAD16_ORYSJ3.971e-3744.06MADS-box transcription factor 16 OS=Oryza sativa s... [more]
CMB2_DIACA1.561e-3345.45MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MADS2_PETHY8.866e-2937.13Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
GLOB_ANTMA7.767e-2534.31Floral homeotic protein GLOBOSA OS=Antirrhinum maj... [more]
GGM13_GNEGN5.034e-2434.29MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
M17_MAIZE8.587e-2438.13MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=... [more]
MADS2_ORYSJ3.263e-2332.84MADS-box transcription factor 2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_C09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932734 ID=CK932734; Name=CK932734; organism=Citrus sinensis; type=EST; length=815bp
GGGGGGGGAAAATGGGTAGAGGAAAGATGGAGATGAAGAGGATTGAGAAC
GCAACGAACAGGCAGGTGACATTCTCAAAGAGACGAAATGGGCTTTTCAA
GAAAGCTCGTGAACTCACCATTCTCTGTGATGCCAAGGTTTCCATTCTCA
TCTGTTCAAGCACTGCTAAGGCCCATGAATACATCAGCCCTTCCACTACA
ACAAAGCAATTGCTTGATTTGTATCAGAAGACTTTAAGAATCGATCTTTG
GAGCTCTCATTATGAGAAAATGCTAGAGAATCTGGGGGCTGTGGAACAAG
TGAATAGGATTCTGAAGAAGCAAATTAGGCAGAGGATGGGTGAAAGCTTG
AACGATCTGACCTTGGAGGAATTGACTGGTCTTGAGCAAGATATCCTTGA
TGGTTTAAAGATTATTCATGAATGCAAGGATCAGGTGCTCGCGAGACAGA
TTAATACTTTCAAGAGAAAGGTAAGGGGTGTGCAAAAAGAGAACAAAAGT
CTTCAGGATGGATTTATCATTAATGCTAAAGAGGAGGATCCGCACTATGA
GTATGAGTTAGTTGATAACGGTGAGCATTGTGATTCTGATTTTGGATTCC
AAAATGAAGGTCCTGGCATATTTGCTTTACGCTTGCAGCCTAACTAAGCC
TAAAGTACCCAGTGGACGAAGACTGAGTAGCATGTGAGATGACTTAGCAT
TATCAATACATTAAGTTACCAACACACTATAAGTATGAGAATTTGATGAA
GTGTTTTAAATATGGTAAGAATCACCTTGTTTTAGCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
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