CK932738

Overview
NameCK932738
Unique NameCK932738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.985e-77
Identity = 139/159 (87.42%), Postives = 145/159 (91.19%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFL+S             NRFWKSIGLGFKTPREA++GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFTA+
Sbjct:    1 MAEQTEKAFLKQPKVFLASKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 284.263 bits (726), Expect = 4.889e-76
Identity = 139/159 (87.42%), Postives = 142/159 (89.31%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLS+             NRFWKSIGLGFKTPREA+EGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSTKKTGKGKRPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 6.385e-76
Identity = 138/158 (87.34%), Postives = 142/158 (89.87%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTA 568
            MAEQTEKAFLKQPKVFLSS             NRFWKSIGLGFKTPREA+EGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFTA
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 274.633 bits (701), Expect = 3.874e-73
Identity = 133/159 (83.65%), Postives = 139/159 (87.42%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREA++G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFT +
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.127e-72
Identity = 133/160 (83.12%), Postives = 140/160 (87.50%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREA++G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.593e-72
Identity = 132/159 (83.02%), Postives = 139/159 (87.42%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 571
            MAEQTEKAFLKQPKVFLSS             NRFWK+IGLGFKTPREA+EGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFT M
Sbjct:    1 MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.769e-52
Identity = 103/158 (65.19%), Postives = 124/158 (78.48%), Query Frame = 2
Query:   95 MAEQTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFT 565
            MAEQTEKAF KQ  V                 +RF+K++GL FKTP+EA++G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+
Sbjct:    1 MAEQTEKAFQKQVGV-TGCFKSKEKKAPGKSGHRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFS 155          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.651e-47
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R+++S+GLGFKTPREA++GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLEGETGKEKLPRYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.768e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EA+EGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
BLAST of CK932738 vs. ExPASy Swiss-Prot
Match: RS11_MOUSE (40S ribosomal protein S11 OS=Mus musculus GN=Rps11 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.768e-47
Identity = 91/154 (59.09%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  104 QTEKAFLKQPKVFLSSXXXXXXXXXXXXXNRFWKSIGLGFKTPREAVEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 562
            QTE+A+ KQP +F +               R++K+IGLGFKTP+EA+EGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:    5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          
The following BLAST results are available for this feature:
BLAST of CK932738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES1.985e-7787.4240S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN4.889e-7687.4240S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE6.385e-7687.3440S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH3.874e-7383.6540S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH1.127e-7283.1340S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH5.593e-7283.0240S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE3.769e-5265.1940S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_XENLA3.651e-4758.4440S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT4.768e-4759.0940S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]
RS11_MOUSE4.768e-4759.0940S ribosomal protein S11 OS=Mus musculus GN=Rps11... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004530_B08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932738 ID=CK932738; Name=CK932738; organism=Citrus sinensis; type=EST; length=746bp
GGGGCCGCGCTTGATTTAGGGTTTTCTGCATTGTGTTAGCCACCTCCGCC
CAGTGCGTTCATCATCCTCAACAACTCAGCCCCGAAATCCAGCCATGGCG
GAGCAGACCGAGAAGGCGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCTC
GAAGAAGGCAGGAAAAGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCT
GGAAGAGCATAGGCTTGGGATTCAAGACTCCCAGAGAGGCAGTTGAAGGG
ACTTACATCGATAAGAAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGG
TCGTATCCTTGCTGGTACTTGCCACAGTGCTAAGATGAACAGAACCATCA
TCGTTAGGCGTAACTACCTTCACTTTGTGAAGAAATATCAGAGGTATGAG
AAGAGGCACTCTAACATTCCAGCACACATCTCACCTTGTTTCCGTGTGAA
AGAGGGAGACCATGTTATCATTGGCCAGTGCAGGCCTTTGTCAAAGACGG
TCAGGTTTAATGTCTTGAAAGTGATACCTGCTGGGTCTTCTGGTGGTGCA
AAGAAGGCATTCACGGCGATGTGAGTTGGAGTCCGCTGTTTCCAACATTA
AATTTTTGCTACTTTTGTTCCATGGGACTTTGTTATTTGGATTTTTGCAT
TGGGAATTAAATCCTTTTATGTCCTAATATATATTTTCTAGAGAAGTTAA
TTTTTCCTTTTGCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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