CK932760

Overview
NameCK932760
Unique NameCK932760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7044 contig Csv1_Contig7044:538..1129. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK932760 vs. ExPASy Swiss-Prot
Match: ILR3_ARATH (Transcription factor ILR3 OS=Arabidopsis thaliana GN=ILR3 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.072e-23
Identity = 55/92 (59.78%), Postives = 65/92 (70.65%), Query Frame = 2 
Query:    5 LKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXX--GQVVGGKLVPLVGYPGVSMWQFMPPAAVDTSQDHVLRPPVA 274
            LK EKNELRDEKQRLK EKE LE+Q+KA+++                    GQ  G K+VP++ YPGV+MWQFMPPA+VDTSQDHVLRPPVA
Sbjct:  143 LKTEKNELRDEKQRLKTEKEKLEQQLKAMNAPQPSFFPAPPMMPTAFASAQGQAPGNKMVPIISYPGVAMWQFMPPASVDTSQDHVLRPPVA 234
[Close]
BLAST of CK932760 vs. ExPASy Swiss-Prot
Match: BH115_ARATH (Transcription factor bHLH115 OS=Arabidopsis thaliana GN=BHLH115 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.712e-21
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:    5 LKCEKNELRDEKQRLKNEKENLERQVKALSSQXXXXXXXXXXXXXXXXXGQVVGGKLVPLVGYPGVSMWQFMPPAAVDTSQDHVLRPPVA 274
            LK EKNELRDEKQ+LK EKE +++Q+KA+ +Q                  Q  G KLVP   YPG +MWQFMPPAAVDTSQDHVLRPPVA
Sbjct:  138 LKDEKNELRDEKQKLKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQ-AQAPGSKLVPFTTYPGFAMWQFMPPAAVDTSQDHVLRPPVA 226
The following BLAST results are available for this feature:
BLAST of CK932760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ILR3_ARATH1.072e-2359.78Transcription factor ILR3 OS=Arabidopsis thaliana ... [more]
BH115_ARATH1.712e-2158.89Transcription factor bHLH115 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004530_A01 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932760 ID=CK932760; Name=CK932760; organism=Citrus sinensis; type=EST; length=592bp
GGGATTAAAGTGTGAGAAGAATGAGCTTCGTGACGAGAAACAGAGGCTAA
AAAATGAGAAGGAAAATCTTGAGAGGCAAGTAAAAGCCTTGAGTTCTCAG
CCTGCCTTCTTACCTCATCCTCCTCCAGTCCCGGCTCCATTTTCTGCACC
AGGTCAAGTTGTTGGTGGCAAATTGGTGCCCTTAGTTGGCTATCCTGGAG
TTTCCATGTGGCAGTTCATGCCACCTGCTGCTGTCGATACGTCACAGGAT
CATGTTCTCCGTCCTCCAGTTGCTTAAATTTGCAGGCTTTTCTAGGTCTG
CCTTCCCTCAGCACTAGATGCCTTAATTTGTTGATAATGAATCTTGACAG
AGATCTCGGTGTTGTTTTCACAATTTTATTTGCTTTAAGTTGGGGATCTA
TGAGAGTACACTGATTTTATTGGGAAACTTGGAACTCATTGAATGTTCGG
ATAACATGTAATTCCCATCAAACAAATCTTGTTAGTACCAATTTTGACCG
GTCAAACTGATGGCTTGCTTGGTCATTCTTTATCGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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