CK932762

Overview
NameCK932762
Unique NameCK932762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8649 contig Csv1_Contig8649:80..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.219e-14
Identity = 53/197 (26.90%), Postives = 98/197 (49.75%), Query Frame = 1
Query:   46 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHEIIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            + A+LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   +I+ F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:    7 LLALLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: TMED_NEMVE (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.899e-14
Identity = 53/194 (27.32%), Postives = 93/194 (47.94%), Query Frame = 1
Query:   55 ILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHEIIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            +L F+      Y I      EECF H+    G  +   F V  A+  +      +D+ + GP    I+    + S K+ F AH  G + +CF+NK  +   +++ F + +G          +   + L E +S+L EA+  ++ EQ ++E +      +N+  + R V+ +F+ES  LV  ++ QVY L+R FE
Sbjct:   12 VLMFLARSSLCYFITIDAHGEECF-HDKVTSGTKMGLIFEV--AEGGFLD----IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFFE 198          
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.944e-14
Identity = 52/197 (26.40%), Postives = 97/197 (49.24%), Query Frame = 1
Query:   46 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHEIIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   +I+ F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:    2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 191          
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.457e-14
Identity = 52/197 (26.40%), Postives = 97/197 (49.24%), Query Frame = 1
Query:   46 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHEIIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   +I+ F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:    7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.434e-14
Identity = 52/197 (26.40%), Postives = 97/197 (49.24%), Query Frame = 1
Query:   46 IAAILAFIFSPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHEIIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            +  +LA + +  + Y +      EECF   V   G  +   F V  A+  +      +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   +I+ F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:    7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEV--AEGGFLD----IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CK932762 vs. ExPASy Swiss-Prot
Match: SEL9_CAEEL (Suppressor/enhancer of lin-12 protein 9 OS=Caenorhabditis elegans GN=sel-9 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.543e-12
Identity = 57/199 (28.64%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   55 ILAFIF-SPQAVYGIRFVIDREECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK----SPYHEIIDFDVHVGHFSYYDEHAKDEHFN--PLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 630
            ILA +F +P A Y I    + E+CF   +   G  +   F V  A+  +      +D+ + GP + +I+    + S KF F AH  GV+ +CF NK    +P   +   ++   H       A  +  +   L E + +L  AL +++ EQ ++E +      +NE  + R V  A +E+  LVG +V Q++ L+R FE
Sbjct:    7 ILAVLFVTPAASYFIHVDANEEQCFFDRLT-SGTKMGLMFEV--AEGGFLD----IDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKAVMFTVEITEPHQQAPGAAANQDAADNAKLEEMVRELSSALMSVKHEQEYMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFFE 198          
The following BLAST results are available for this feature:
BLAST of CK932762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TMED2_MOUSE2.219e-1426.90Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED_NEMVE2.899e-1427.32Transmembrane emp24 domain-containing protein OS=N... [more]
TMED2_CRIGR4.944e-1426.40Transmembrane emp24 domain-containing protein 2 (F... [more]
TMED2_RAT6.457e-1426.40Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN8.434e-1426.40Transmembrane emp24 domain-containing protein 2 OS... [more]
SEL9_CAEEL3.543e-1228.64Suppressor/enhancer of lin-12 protein 9 OS=Caenorh... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004530_A03 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932762 ID=CK932762; Name=CK932762; organism=Citrus sinensis; type=EST; length=842bp
GGGGAACTTCAATCGAAGATGAAAGTTGGGCCAGTTGGGTTCTGTATTGC
TGCAATTTTGGCATTTATTTTTAGCCCTCAGGCTGTTTATGGTATTAGAT
TTGTGATTGATAGAGAAGAATGTTTTTCTCATAATGTACAATATGAAGGC
GACACGGTTCATGCTTCATTTGTTGTCATTAAGGCTGATTCATCTTGGTA
TAGTAGTCACGACGGTGTTGATCTTGTGGTGAAGGGACCTGCTAGTGATC
AGATTCATGATTTTCGTGATAAGATCAGTGAGAAATTTGAGTTTGTGGCC
CATCATAAAGGAGTCCACCGCTTCTGCTTCACAAACAAGTCTCCGTATCA
TGAAATCATAGACTTTGATGTACATGTTGGCCACTTTTCATACTATGATG
AGCATGCCAAAGATGAGCATTTTAATCCTTTGCTAGAACAGATATCCAAA
TTGGAGGAAGCCCTTTACAACATTCAGTTCGAACAGCATTGGCTTGAGGC
GCAGACTGAACGCCAGGCAATAGTAAATGAAGCAATGAGTCGGAGGGCAG
TTTACAAGGCATTCTGGGAATCCACTGCACTTGTCGGTGCAAGTGTTCTT
CAAGTCTACCTCCTCCGCCGCCTGTTCGAAAGGAAGCTTGGGATGTCCAG
AGTTTAGCTCTGGTCCTCAAGCGATGAGTTGTAGGATTATACAGCCTAGT
GCTGTTTCGTGTTTTTTGTTTCTTTTGTGATCTGCCGGCCAGAGAAGAAC
ACTTACAGAAACTAAATTATACATTTGAATAGTTATCTCAATGATAATAG
ATCCAAGGACTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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