CK932763

Overview
NameCK932763
Unique NameCK932763
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932763_ssr49 microsatellite CK932763_ssr49:49..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1484 contig Csv1_Contig1484:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.013e-65
Identity = 111/147 (75.51%), Postives = 128/147 (87.07%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKL-DEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHSKGHFLNPEQRDWSRYQPWEPSKKE 483
            IRE+GLG F+R ++EEGF+R L DGNL+QTK+HN GATLVGVDKFGNKYYQKL D Q+GRHRWVEYA K RYNASQVP EWHGWLH +TDHTGDELL LKPKRYGLEH+EN SGEG+ +IYHSKGH LNP Q++W+RYQ W P+K +
Sbjct:   13 IREKGLGGFMRMIREEGFMRCLPDGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWLHFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 49/129 (37.98%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            + +RGL          G+LR L   N +      R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     H+ NLSG  ++++ +S
Sbjct:    6 VLKRGLQQVSGHGGLRGYLRVLFRANDV------RVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_CAEEL (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 54/145 (37.24%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   70 FLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKS--RYNASQVPPEWHGWLHCMTDHTGDELLMLKP---KRYGLEHRENLSGEGEEFIYHSKGHFLNPEQRDWSRYQPWEPSKKE*F 489
            F + +KE G ++A+L    +      R  TLVG D FGN+YY+       R+RWVE+ +K    Y+A+QVPPEWH WLH    H  D+   +KP   + + LEH+EN S      IY  K +   P     ++ Q W+P +K  F
Sbjct:   15 FGQMVKEIGGVKAVLKKRYLMDA--TRVGTLVGSDNFGNRYYENNAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLH----HITDDAPSVKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQPGEKPQF 145          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 45/129 (34.88%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    6 VLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 45/129 (34.88%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    6 VLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 40/95 (42.11%), Postives = 51/95 (53.68%), Query Frame = 1
Query:  148 RGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            R  TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLHCMTD           K     H+ N+S   E+++ +S
Sbjct:   34 RIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 45/129 (34.88%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH MTD       +   K     H+ N++G  E+++ +S
Sbjct:    6 VLKRGLQQITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 44/129 (34.11%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   46 IRERGLGSFLRELKEEGFLRALLDGNLMQTKLHNRGATLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSR-------YNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSGEGEEFIYHS 411
            + +RGL          G+LR     N  +        TLVG DK+GNKYY+   + FGRHRWV Y  +          + S VPPEWH WLH +TD       +   K     H+ N++G  E+++ +S
Sbjct:    6 VLKRGLQRITGHGGLRGYLRVFFRTNDAKV------GTLVGEDKYGNKYYEDNKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128          
BLAST of CK932763 vs. ExPASy Swiss-Prot
Match: NDUAC_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 1
Query:  157 TLVGVDKFGNKYYQKLDEQFGRHRWVEYAEKSRYNASQVPPEWHGWLHCMTDHTGDELLMLKPKRYGLEHRENLSG 384
            TLVGVDK GN+YY+   E +GRHRWVEY +    + + +PPE+H W+H ++D    E+L   P  Y   H  N +G
Sbjct:   33 TLVGVDKVGNRYYENRQEIYGRHRWVEYGDYKSNDPTTIPPEYHSWIHHVSDKLPSEMLPFSP-TYKRPHIANPTG 107          
The following BLAST results are available for this feature:
BLAST of CK932763 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NDUAC_ARATH2.013e-6575.51Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_BOVIN8.575e-1637.98NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_CAEEL5.558e-1537.24Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
NDUAC_GORGO2.758e-1434.88NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PANTR3.603e-1434.88NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_MOUSE3.603e-1442.11NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_HUMAN3.603e-1434.88NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_PONPY1.369e-1334.11NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAC_DICDI1.369e-1344.74NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004530_A05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932763 ID=CK932763; Name=CK932763; organism=Citrus sinensis; type=EST; length=694bp
GGGGAAGGAAAATAGAAAATGGCTATGAAGAGCGCGTTGAAGTCGATCAG
AGAGAGAGGTCTCGGTTCCTTCCTTCGCGAGCTCAAGGAAGAAGGCTTCC
TGAGGGCACTTCTTGATGGAAATCTCATGCAAACCAAGTTACATAATAGA
GGGGCAACGCTTGTTGGAGTTGATAAATTTGGTAACAAGTATTATCAGAA
ACTTGACGAGCAATTTGGAAGACACAGGTGGGTTGAATATGCAGAGAAGA
GTCGCTACAATGCTTCCCAGGTGCCACCAGAATGGCACGGTTGGCTGCAC
TGCATGACTGATCACACAGGAGATGAGCTTCTGATGCTGAAACCGAAGAG
ATACGGACTTGAGCACAGGGAAAATTTATCGGGAGAGGGTGAGGAGTTTA
TCTATCATTCCAAAGGACATTTCCTCAATCCAGAGCAGAGAGACTGGTCT
AGGTACCAACCATGGGAACCCTCCAAGAAAGAGTAATTTCTTCATCAACT
TCCCATGTTAACTTGCAAAATCTGGGATTTTGGCTGCCGTTTCCATTAAT
AAAATGTCTTGTACTTGTTTGAAGCAATAGAATTTTTGCATTTGCTTACC
ACATTAATGAAATGTCTTGTACTTGTTTGAAGCAATAGAATTTTTGCATT
TGCTTACCACATTAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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