CK932767

Overview
NameCK932767
Unique NameCK932767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.659e-33
Identity = 72/170 (42.35%), Postives = 108/170 (63.53%), Query Frame = 1
Query:  115 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            PGK+FIGGL+ +TS      +FG+YG+I+++++MKD  T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K   P+ A      +TKKIFVGG+ +    ++ K +F QFG +++  +M D  T+R RGFGF+TF +E  V                V  KKA+PK
Sbjct:   28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEIN-NKMVECKKAQPK 196          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.372e-32
Identity = 72/167 (43.11%), Postives = 105/167 (62.87%), Query Frame = 1
Query:  121 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            K+FIGGL  +T+     ++FGKYG +TD  IMKD  TG+ RGFGF+++  PS VD+V++  HI++GK ++ KR IP+     +  KT KIFVGGI   V   EF++FF Q+G + + Q+M D  T +SRGFGF+T+D+  AV               ++  K+AEP+
Sbjct:  160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPR 321          

HSP 2 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  118 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 351
            GKIF+GG+  +    +F + F ++G I D+ +M D+ TGQ RGFGFVTY     VD+V ++  I    +++EIKR  P+
Sbjct:  243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.900e-32
Identity = 70/182 (38.46%), Postives = 106/182 (58.24%), Query Frame = 1
Query:   76 DDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            +D ++  +      GK+FIGGL  ET+      +F ++GE+ D  +M+D  TG+ RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+     +  KT K+FVGG+P    E+EF++FF QFG V +  +M D  T R RGFGF+T++ E AV             G  V  K+A PK
Sbjct:  149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIH-GKPVEVKRATPK 325          

HSP 2 Score: 76.2554 bits (186), Expect = 1.446e-13
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   55 SSDHHPEDDRSQPHTG----DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAV 360
            S +HH +     P       +     K+F+GG+  + +  +F   F ++G + D+ +M D+ TG+PRGFGFVTY + S V+  +   +I I+GK VE+KR  PK ++
Sbjct:  222 SKEHHLDGKIIDPKRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATPKASL 328          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.842e-31
Identity = 70/170 (41.18%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  115 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            PGK+FIGGL+ +TS      +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V                V  KKA+PK
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEIN-NKMVECKKAQPK 188          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.842e-31
Identity = 70/170 (41.18%), Postives = 105/170 (61.76%), Query Frame = 1
Query:  115 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            PGK+FIGGL+ +TS      +F K+GEI + ++M+D  T + RGFGFVT+ADP+ VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+ ++   ++ K +F QFG+V++  +M D +T+R RGFGF+TF+ E  V                V  KKA+PK
Sbjct:   20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEIN-NKMVECKKAQPK 188          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.459e-30
Identity = 66/169 (39.05%), Postives = 107/169 (63.31%), Query Frame = 1
Query:  118 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            GK+F+GGL+ ET+     ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++  H ++G+ ++ K   P+     K     K+F+GG+PS+V E + + FF ++G+V E  IM D    +SRGFGF++F+ E +V             G QV  KKAEP+
Sbjct:    7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLN-GKQVEIKKAEPR 174          

HSP 2 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   88 QPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPKGAVGSKD 372
            +P  G G    K+F+GGL    +       F +YG++T+ VIM D++  + RGFGF+++ + S V+ V  + +I +NGKQVEIK+  P+   G ++
Sbjct:   89 KPKKGGGY---KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEPRDGSGGQN 181          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.218e-28
Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   73 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V                V  KKA+PK
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN-NKMVECKKAQPK 187          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   73 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V                V  KKA+PK
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN-NKMVECKKAQPK 187          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.591e-28
Identity = 70/187 (37.43%), Postives = 108/187 (57.75%), Query Frame = 1
Query:   73 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            E D  QP      SP    K+FIGGL+ +T+     ++FG++GE+ + ++M+D  T + RGFGFVT+ D + VDKV+ +  H ++ K ++ K   P+ A      +TKKIFVGG+  +   ++ K +F QFG+V +  +M D +T+R RGFGF+TF++E  V                V  KKA+PK
Sbjct:    2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEIN-NKMVECKKAQPK 187          
BLAST of CK932767 vs. ExPASy Swiss-Prot
Match: DAZP1_HUMAN (DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.629e-28
Identity = 70/183 (38.25%), Postives = 100/183 (54.64%), Query Frame = 1
Query:  118 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVXXXXXXXXXXXXAGAQVXXKKAEPK 621
            GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                 S + K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+V             G +V  K+AEP+
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV-DQAVNMHFHDIMGKKVEVKRAEPR 191          

HSP 2 Score: 69.3218 bits (168), Expect = 1.767e-11
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 1
Query:   73 EDDRSQPHTG-------DGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 351
            + +R++P  G       D +   KIF+GG+       +  ++F K+G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191          
The following BLAST results are available for this feature:
BLAST of CK932767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
MSIR6_DROME3.659e-3342.35RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
HRP1_YEAST2.372e-3243.11Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
YHKF_SCHPO6.900e-3238.46Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
MSI2H_MOUSE5.842e-3141.18RNA-binding protein Musashi homolog 2 OS=Mus muscu... [more]
MSI2H_HUMAN5.842e-3141.18RNA-binding protein Musashi homolog 2 OS=Homo sapi... [more]
RB27C_DROME6.459e-3039.05Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
MSI1H_HUMAN1.218e-2837.43RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
MSI1H_RAT1.591e-2837.43RNA-binding protein Musashi homolog 1 OS=Rattus no... [more]
MSI1H_MOUSE1.591e-2837.43RNA-binding protein Musashi homolog 1 OS=Mus muscu... [more]
DAZP1_HUMAN4.629e-2838.25DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004529_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0001_IIF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932767 ID=CK932767; Name=CK932767; organism=Citrus sinensis; type=EST; length=623bp
GACCCAGAATCTAATGAAGGAATTGTTGACAGAGATTCTAACGATGTTCA
TAAATCGTCAGACCACCACCCAGAAGATGACAGGTCTCAGCCTCACACCG
GTGACGGAGCCAGCCCTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAG
ACGTCGTCAGCTCAATTTATCAAGCATTTCGGTAAATATGGTGAAATTAC
GGATTCTGTGATAATGAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTG
GCTTTGTTACTTATGCTGATCCCTCTGTAGTTGATAAAGTCATTGAAGAC
ACTCACATTATTAATGGGAAACAGGTGGAAATTAAGCGAACAATTCCAAA
AGGGGCTGTTGGCTCTAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTG
GAATTCCGTCATCAGTGAATGAAGATGAATTTAAGGACTTCTTTATGCAA
TTTGGAGAGGTACAAGAGCACCAAATCATGCGGGATCATTCTACCAGTCG
ATCTCGTGGTTTTGGATTTATCACTTTTGACACGGAGCAAGCAGTTGATG
ACCTTTTGGNNNAGGGGGACAAGCTTGAGTTGGCTGGAGCCCAGGTGGAN
NNCAAGAAAGCAGAACCAAAGAA
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