CK932822

Overview
NameCK932822
Unique NameCK932822
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12965 contig Csv1_Contig12965:30..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932822 vs. ExPASy Swiss-Prot
Match: TIM13_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim13 OS=Oryza sativa subsp. japonica GN=TIM13 PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.942e-20
Identity = 52/88 (59.09%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:   25 MDSFTSSXXXAGSSQFSNEEFMDKLKLQLAQAYAQEFLETVTGKCFEKCITKPGXXXXXXXXXXXXRCVDRYIEATGIIGRALFSAQR 288
            MDSF+SS      S  + E  MD++K QLAQAYAQEFLETV  KCF KC+TKPG            RCVDRYIEATGI+ RALFS+ R
Sbjct:    1 MDSFSSS----SGSPPNTEALMDQIKAQLAQAYAQEFLETVGNKCFAKCVTKPGSSLSGSESSCISRCVDRYIEATGIVSRALFSSTR 84
[Close]
BLAST of CK932822 vs. ExPASy Swiss-Prot
Match: TIM13_ARATH (Mitochondrial import inner membrane translocase subunit Tim13 OS=Arabidopsis thaliana GN=TIM13 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.303e-16
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:   25 MDSFTSSXXXAGSSQFSNEEFMDKLKLQLAQAYAQEFLETVTGKCFEKCITKPGXXXXXXXXXXXXRCVDRYIEATGIIGRALFS 279
            MDS++S       S  S E  M+ +K QLAQAYA+E +ET+  KCF+KC+TKPG            RCV+RY+EAT II R+LF+
Sbjct:    1 MDSYSSPPMGGSGSSVSPEVMMESVKTQLAQAYAEELIETLRTKCFDKCVTKPGSSLGGSESSCISRCVERYMEATAIISRSLFT 85
The following BLAST results are available for this feature:
BLAST of CK932822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TIM13_ORYSJ1.942e-2059.09Mitochondrial import inner membrane translocase su... [more]
TIM13_ARATH1.303e-1648.24Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004350_H11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932822 ID=CK932822; Name=CK932822; organism=Citrus sinensis; type=EST; length=528bp
GGGGGAAGAGAAGACCATTAGCAAATGGATTCGTTTACATCTTCAGNNNN
NNGAGCAGGATCGTCTCAGTTCTCAAATGAGGAGTTCATGGACAAGTTGA
AGCTCCAGCTTGCTCAGGCTTATGCCCAGGAGTTTCTCGAGACTGTAACA
GGCAAGTGCTTTGAGAAGTGCATCACAAAACCAGGTTCAAGTCTGAGTGG
CAGTGAGAGTAGTTGCGTCTCTCGGTGTGTGGATCGCTATATTGAGGCCA
CTGGCATCATTGGCAGAGCGCTCTTTAGTGCACAGCGCTGATCTTTCAGA
TTGCAGCATTTATGCAGAAAAGAATGTGCAATTTGCCAAATCTTGGATCA
ACAATTATATTTGGTCTTTACTATTCCATTTCTCGCAATCATCAAGTATT
TTCTTTGCCTTGAATCTTACTATATGTACCGCAATTTCTTTATGCAAACT
TGAAATATCTTAGCATCTTATCTGTTAATGCTAGAATTAGTACTTATTAC
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
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