CK932840

Overview
NameCK932840
Unique NameCK932840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length566
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13638 contig Csv1_Contig13638:98..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RK31_ARATH (50S ribosomal protein L31, chloroplastic OS=Arabidopsis thaliana GN=RPL31 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.357e-41
Identity = 82/127 (64.57%), Postives = 95/127 (74.80%), Query Frame = 2
Query:    8 PNTFFQIKXSAPILPTRKVKNCAATGSGYRTR-------VVTCRKKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFGGLSEIMEIPVLKGEIVLP 367
            PN+F QI    P L  RK    A  G     R        +TCRKK++HP+F+EDAKVYCNGELVM TGGT+KEYVVDVWSGNH FYLG  SA++VDADQVEKFR++F GLSEIMEIPVLKGEI++P
Sbjct:    6 PNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHEDAKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIMEIPVLKGEIIMP 132          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_SYNP6 (50S ribosomal protein L31 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFGGL 319
            K DIHPQ+Y +AKVYCNGE VM  G TQ E  VDVWSGNH FY G    +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_SYNE7 (50S ribosomal protein L31 OS=Synechococcus elongatus (strain PCC 7942) GN=rpmE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFGGL 319
            K DIHPQ+Y +AKVYCNGE VM  G TQ E  VDVWSGNH FY G    +  +  +VE+F +K+G L
Sbjct:    3 KADIHPQWYPEAKVYCNGEEVMTVGSTQPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYGML 68          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_PROMA (50S ribosomal protein L31 OS=Prochlorococcus marinus GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFG 313
            KKDIHP +Y DAKV CNGE+VM TG TQ E  VDVWSGNH F+ G    +  +  +V++F +K+G
Sbjct:    3 KKDIHPNWYPDAKVICNGEVVMTTGSTQPEIHVDVWSGNHPFFTGTQKILDTEG-RVDRFMRKYG 66          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_THEEB (50S ribosomal protein L31 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 35/67 (52.24%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDAD-QVEKFRQKFGG 316
            K +IHPQ+Y +AKVYC+GE++M  G T+ E  VD+WSGNH F+ G  +  +VDA+ +VE+FR+K+ G
Sbjct:    3 KPNIHPQWYPEAKVYCDGEVIMTVGSTKPELHVDIWSGNHPFFTG--TQKIVDAEGRVERFRRKYSG 67          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_NOSP7 (50S ribosomal protein L31 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpmE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.149e-14
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFG 313
            K DIHP++Y DAKVYCNG++VM  G T+ E  VDVWSGNH FY G    +  +  +VE+F +K+G
Sbjct:    3 KADIHPKWYPDAKVYCNGQVVMTIGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_SYNJB (50S ribosomal protein L31 OS=Synechococcus sp. GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDAD-QVEKFRQKFG 313
            KK +HPQ+Y +AKV CNGE+VM  G T+ E  VDVWSGNH F+ G  S  ++D++ +VEKF +K+G
Sbjct:    3 KKGLHPQWYPEAKVICNGEVVMTVGSTKPELKVDVWSGNHPFFTG--SQKIIDSEGRVEKFMRKYG 66          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_ANAVT (50S ribosomal protein L31 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFG 313
            K DIHP++Y +AKVYCNG++VM  G T+ E  VDVWSGNH FY G    +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_ANASP (50S ribosomal protein L31 OS=Anabaena sp. (strain PCC 7120) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFG 313
            K DIHP++Y +AKVYCNG++VM  G T+ E  VDVWSGNH FY G    +  +  +VE+F +K+G
Sbjct:    3 KSDIHPKWYPEAKVYCNGQVVMTVGSTKPELHVDVWSGNHPFYTGTQKIIDTEG-RVERFLRKYG 66          
BLAST of CK932840 vs. ExPASy Swiss-Prot
Match: RL31_ACAM1 (50S ribosomal protein L31 OS=Acaryochloris marina (strain MBIC 11017) GN=rpmE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.372e-14
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  119 KKDIHPQFYEDAKVYCNGELVMATGGTQKEYVVDVWSGNHAFYLGGHSAVVVDADQVEKFRQKFG 313
            K DIHP++Y +AKVYC+GE+VM  G TQ+E  VDVWSGNH F+ G    +  +  +VE+F +K+G
Sbjct:    3 KPDIHPKWYPEAKVYCDGEVVMTVGSTQEELHVDVWSGNHPFFTGTQKIIDTEG-RVERFMRKYG 66          
The following BLAST results are available for this feature:
BLAST of CK932840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RK31_ARATH1.357e-4164.5750S ribosomal protein L31, chloroplastic OS=Arabid... [more]
RL31_SYNP68.288e-1556.7250S ribosomal protein L31 OS=Synechococcus sp. (st... [more]
RL31_SYNE78.288e-1556.7250S ribosomal protein L31 OS=Synechococcus elongat... [more]
RL31_PROMA1.846e-1455.3850S ribosomal protein L31 OS=Prochlorococcus marin... [more]
RL31_THEEB3.149e-1452.2450S ribosomal protein L31 OS=Thermosynechococcus e... [more]
RL31_NOSP73.149e-1453.8550S ribosomal protein L31 OS=Nostoc punctiforme (s... [more]
RL31_SYNJB5.372e-1454.5550S ribosomal protein L31 OS=Synechococcus sp. GN=... [more]
RL31_ANAVT5.372e-1452.3150S ribosomal protein L31 OS=Anabaena variabilis (... [more]
RL31_ANASP5.372e-1452.3150S ribosomal protein L31 OS=Anabaena sp. (strain ... [more]
RL31_ACAM15.372e-1452.3150S ribosomal protein L31 OS=Acaryochloris marina ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_H08 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932840 ID=CK932840; Name=CK932840; organism=Citrus sinensis; type=EST; length=566bp
GCGGGGGCCCAACACATTCTTCCAAATCAAANNNTCTGCTCCAATTCTCC
CCACCAGAAAGGTGAAGAACTGTGCAGCAACGGGCAGTGGTTACAGGACC
CGGGTGGTGACGTGTCGAAAGAAGGACATACACCCTCAATTCTACGAGGA
TGCAAAGGTGTACTGTAACGGTGAGCTCGTAATGGCGACGGGTGGGACCC
AGAAGGAGTACGTGGTGGATGTCTGGTCGGGAAACCATGCGTTTTACCTC
GGCGGCCACTCTGCTGTTGTCGTCGACGCCGACCAAGTCGAGAAGTTCCG
TCAGAAGTTCGGAGGATTGTCTGAGATTATGGAAATTCCCGTGCTTAAAG
GAGAGATTGTGTTGCCGCCTAAGCGCAAGTCCGCGGCCTCTAAAGGTGGC
GAGAAGAAGTAGAAATTTGGTACGACGTTGTTTTTGAGGTAATTGGGGAA
TGTTTGTGAGTGGATGGATTTTATTTGATCGAATGATGTGTTGATATTTG
AACGACAAACATTATTATCAAATTATCTTTTTCATGAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
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