CK932847

Overview
NameCK932847
Unique NameCK932847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932847_ssr732 microsatellite CK932847_ssr732:732..743. BLAST: Citrus ESTs to Prunus persica proteins V1
CK932847_ssr168 microsatellite CK932847_ssr168:168..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYOD_DICDI (Myosin ID heavy chain OS=Dictyostelium discoideum GN=myoD PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 47/151 (31.13%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  250 KVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPETD-------------ALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATKGASEELEVAFSNS 663
            K RR+ S+ R Y+GDY++   +  L  I++K G+++++F   + K+    + +RR+LL++D AIY +  E +               KRR+ LA +  + LS+LSD F  +   +E+D +    RKTE +  L++A K  +  L + ++NS
Sbjct:  725 KERRRLSIERPYQGDYINYRENFELKDIVKKNGNEKIMFTHAVNKYDRRSRCQRRVLLLSDTAIYFIATEKNKDKEDRKKRPWIYVQKRRLLLAGITSVELSKLSDGFVVLKTMNEHDQIFECRRKTEFLGTLIKAYKTGT--LRINYNNS 873          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYSB_ACACA (Myosin heavy chain IB OS=Acanthamoeba castellanii GN=MIB PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 50/152 (32.89%), Postives = 87/152 (57.24%), Query Frame = 1
Query:  244 GIKVRRKASLHRDYKGDYLDVASHPYLMKILQKQG-DKQVL-FADKILKFTGSGKMKRRILLITDFAIYLVDPETDA------LKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATK-GASEELEVAFSNSFEY 672
            G K R++ S++R Y+ DY++  ++  L   ++  G DK+   F D++L     GK +RR L++T+ A+Y    +  +      LKRRI L  +  + LS L DN+  +I  ++YD++  + +KTEIVT+L+E  K     +L V F+++  Y
Sbjct:  713 GKKERQRHSVNRKYEFDYINYDANYPLQDCVRSSGRDKEATAFTDQVLVLNRRGKPERRDLIVTNEAVYFAMRKKKSGQVVYNLKRRIPLGEIASLSLSTLQDNY-VVIHHNQYDMVFENDKKTEIVTILMENYKMSGGRDLPVNFNDNITY 863          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYOC_DICDI (Myosin IC heavy chain OS=Dictyostelium discoideum GN=myoC PE=4 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  223 EDQEPFMGIKVRRKASLH--RDYKGDYLDVASHPYLMKILQKQGDKQVLFADK----ILKFTGSGKMKRRILLITDFAIYLVDPE------TDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATKGASEELEVAFSNSFEY 672
            ++++ F G K R + S+   R Y GDYLDV S  Y +  + +  ++ V+F+ K    +     + K+  R L++T  AIYL+  +      T  L RR+ LA V    LS L+DN   I   +++D+ + +  KTE+V  L+   KG +  L V F  S +Y
Sbjct:  763 QNEQLFQGRKERNRFSMISVRKYFGDYLDVRSQSYFLDAMAEGRNEDVIFSSKSQVMVHPILSANKLSPRFLIVTKQAIYLIKLKQKKNLATYLLDRRVPLAEVTSFSLSSLADNLLVIHTSTQFDVAVTTEFKTELV-ALINKQKGTT--LAVNFGQSIQY 921          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYOB_DICDI (Myosin IB heavy chain OS=Dictyostelium discoideum GN=myoB PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 49/153 (32.03%), Postives = 79/153 (51.63%), Query Frame = 1
Query:  238 FMGIKVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQ-VLFADKILKFTGSGKMKRRILLITDFAIYLVDPE------TDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATKG-ASEELEVAFSNSFEY 672
            F   K R++ S+ R +  DY+D  +   L + +Q    K+ V+FAD ++K     K K   +++TD A+Y V+           L RR+ L  ++ + +S LSDN     +P E+D ++ + +KTEI+ VLVE  K      L V FS+   Y
Sbjct:  725 FKDKKERQRNSIDRKFTSDYIDFENQFGLQEAMQNAHKKERVVFADTVIKIDRRAKQKNYEMVLTDQALYFVEKSIKKKVLVHTLIRRVGLREIKGVSISTLSDNVIVFHLP-EHDQVIENDKKTEIIIVLVEYFKAIGGGSLNVQFSDRINY 876          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYO1E_HUMAN (Myosin-Ie OS=Homo sapiens GN=MYO1E PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 48/161 (29.81%), Postives = 87/161 (54.04%), Query Frame = 1
Query:  223 EDQEPFMGIKVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPE-----------TDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEA-TKGASEELEVAFSNSFE 669
            E  +  +  K RR+ S++R++ GDY+ +  HP L + + K+  +++ FAD + K+    K  +R LL+T   +YL+  E            + LKR+I +  +  + LS + D+ F I+   EYD L+ S  KTE +++L +   +   ++L + FSN+ E
Sbjct:  721 EASDLLLNKKERRRNSINRNFIGDYIGMEEHPELQQFVGKR--EKIDFADTVTKYDRRFKGVKRDLLLTPKCLYLIGREKVKQGPDKGLVKEVLKRKIEIERILSVSLSTMQDDIF-ILHEQEYDSLLESVFKTEFLSLLAKRYEEKTQKQLPLKFSNTLE 878          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYSC_ACACA (Myosin IC heavy chain OS=Acanthamoeba castellanii GN=MIC PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.663e-12
Identity = 50/155 (32.26%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  250 KVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQVLFAD---KILKFTGSGKMKRRILLITDFAIYLV--DPETD-----------ALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEATKGASEELEVAFSNSF 666
            K RR+ SL R +K DY++   +  L   +  +G ++VLFAD    + K     K++RRI+++T  A++LV  DP  D            LKRRI    +  + LS L DNF  I +  E+  L+   RKTE++ VL++     +  + + F+++F
Sbjct:  704 KERRRLSLERPFKTDYINYRQNFKLKDCIGDKGTEKVLFADLCNNLDKSFWGSKVERRIMVLTSNAMFLVAIDPNKDKIEKKVKPFLYVLKRRIDFNKIGSITLSPLQDNFMLISVNGEHSNLLECRRKTELIGVLLK----HNPSVRIQFADTF 854          
BLAST of CK932847 vs. ExPASy Swiss-Prot
Match: MYO1E_RAT (Myosin-Ie OS=Rattus norvegicus GN=Myo1e PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 47/152 (30.92%), Postives = 84/152 (55.26%), Query Frame = 1
Query:  250 KVRRKASLHRDYKGDYLDVASHPYLMKILQKQGDKQVLFADKILKFTGSGKMKRRILLITDFAIYLVDPE-----------TDALKRRIALAAVEKMCLSELSDNFFAIIIPSEYDLLMASTRKTEIVTVLVEA-TKGASEELEVAFSNSFE 669
            K RR+ S++R++ GDY+ +  HP L + + K+  +++ FAD + K+    K  +R LL+T   +YL+  E            + LKR+I +  +  + LS + D+ F I+   EYD L+ S  KTE +++L +   +   ++L + FSN+ E
Sbjct:  730 KERRRNSINRNFIGDYIGMEEHPELQQFVGKR--EKIDFADIVTKYDRRFKGVKRDLLLTPKCLYLIGREKVKQGPDKGLVKEVLKRKIEVERILSVSLSTMQDDIF-ILHEQEYDSLLESVFKTEFLSLLTKRYEEKTQKQLPLKFSNTLE 878          
The following BLAST results are available for this feature:
BLAST of CK932847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MYOD_DICDI2.456e-1531.13Myosin ID heavy chain OS=Dictyostelium discoideum ... [more]
MYSB_ACACA2.299e-1332.89Myosin heavy chain IB OS=Acanthamoeba castellanii ... [more]
MYOC_DICDI8.736e-1332.10Myosin IC heavy chain OS=Dictyostelium discoideum ... [more]
MYOB_DICDI1.490e-1232.03Myosin IB heavy chain OS=Dictyostelium discoideum ... [more]
MYO1E_HUMAN2.542e-1229.81Myosin-Ie OS=Homo sapiens GN=MYO1E PE=1 SV=2[more]
MYSC_ACACA5.663e-1232.26Myosin IC heavy chain OS=Acanthamoeba castellanii ... [more]
MYO1E_RAT7.395e-1230.92Myosin-Ie OS=Rattus norvegicus GN=Myo1e PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionCGF1004350_G09 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932847 ID=CK932847; Name=CK932847; organism=Citrus sinensis; type=EST; length=805bp
GGGNGACAAAAGTAAACAACTCAGCAGCGCGTAGGNNNATCCATTCAGAG
AGCGACTCGCCTTTACGCTTCCGAAATGGACCGGTACAGACCGAACCGGC
GAGTCCAAATCGAGGAATCGGAGCCTCCGAAATACGACGACGTCGAAGAC
GAGGATCGGGATGGCCGCGACGACGACGACGATAATTCGAATAGGCTGAG
ACCGTCGGAGAACAATGTGACCGAGGATCAAGAGCCGTTTATGGGAATCA
AAGTCCGTCGAAAGGCTTCGCTTCATCGAGACTACAAAGGCGACTACCTC
GACGTTGCGTCGCATCCGTACTTAATGAAGATTCTGCAAAAACAAGGTGA
CAAGCAAGTTCTTTTTGCTGATAAAATTTTGAAGTTTACTGGTTCCGGGA
AGATGAAACGTCGCATACTTTTAATTACTGACTTTGCAATTTACCTTGTG
GATCCGGAGACTGATGCTCTTAAACGTCGCATAGCCCTGGCAGCTGTAGA
GAAGATGTGTTTGAGTGAACTGAGTGATAATTTCTTTGCGATTATCATCC
CTTCAGAGTATGACCTACTTATGGCTAGTACGCGAAAAACAGAAATTGTC
ACTGTGCTTGTTGAAGCTACGAAGGGTGCATCTGAGGAACTTGAGGTGGC
TTTTTCCAATAGTTTTGAGTACCACGCAGCTGCTGAATTGGTGAAGGAAG
TTGTATTTGAGGAAGTAGAAGGTTTGTGACTACACACACACACCCCCTTA
GAATGACAGAATCTCCAGTAATACACAACAGATTTGGTTATGGGTTGCGC
TGATT
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