CK932856

Overview
NameCK932856
Unique NameCK932856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1492 contig Csv1_Contig1492:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_WHEAT (Histone H3.2 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_TOBAC (Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_PETCR (Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_PEA (Histone H3.2 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_ORYSJ (Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os01g0866200 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_ORYSI (Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_019426 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_ONOVI (Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_MEDSA (Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_MAIZE (Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
[Close]
BLAST of CK932856 vs. ExPASy Swiss-Prot
Match: H32_EUPES (Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 118/136 (86.76%), Postives = 119/136 (87.50%), Query Frame = 3 
Query:   78 MARTKQTARKSTGGKAPRKQLATKAARESAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 485
            MARTKQTARKSTGGKAPRKQLATKAAR+SAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRF                 GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136
The following BLAST results are available for this feature:
BLAST of CK932856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H32_WHEAT8.260e-5986.76Histone H3.2 OS=Triticum aestivum PE=1 SV=2[more]
H32_TOBAC8.260e-5986.76Histone H3.2 OS=Nicotiana tabacum GN=B34 PE=1 SV=1[more]
H32_PETCR8.260e-5986.76Histone H3.2 OS=Petroselinum crispum GN=H3-7 PE=3 ... [more]
H32_PEA8.260e-5986.76Histone H3.2 OS=Pisum sativum PE=1 SV=2[more]
H32_ORYSJ8.260e-5986.76Histone H3.2 OS=Oryza sativa subsp. japonica GN=Os... [more]
H32_ORYSI8.260e-5986.76Histone H3.2 OS=Oryza sativa subsp. indica GN=OsI_... [more]
H32_ONOVI8.260e-5986.76Histone H3.2 OS=Onobrychis viciifolia PE=2 SV=2[more]
H32_MEDSA8.260e-5986.76Histone H3.2 OS=Medicago sativa GN=H3-1.1 PE=1 SV=... [more]
H32_MAIZE8.260e-5986.76Histone H3.2 OS=Zea mays GN=H3C2 PE=1 SV=2[more]
H32_EUPES8.260e-5986.76Histone H3.2 OS=Euphorbia esula GN=H3 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_F12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932856 ID=CK932856; Name=CK932856; organism=Citrus sinensis; type=EST; length=698bp
GGGGCTCGCCATCTTTCAATTTTCATTCATATTTTAAGATCTCCCAAGAA
AAAAGAAACACTTAATTTCCCAAATCAATGGCCCGCACGAAGCAAACCGC
TCGCAAGTCCACCGGAGGCAAGGCCCCAAGAAAGCAACTGGCGACCAAGG
CGGCAAGGGAATCCGCACCGGCAACCGGAGGAGTGAAGAAGCCTCACAGG
TTCCGTCCAGGAACTGTCGCACTCCGTGAAATCAGGAAGTACCAGAAGAG
CACTGAGCTTCTTATTAGGAAGCTTCCGTTCCAGAGATTGGTGAGGGAAA
TCGCTCAGGATTTCAAGACGGATCTGAGGTTCCAGAGCAGCGCTGTTGCT
GCACTTCAGGAGGCTGCTGAGGCTTATCTTGTTGGGCTGTTCGAGGACAC
CAACCTCTGCGCTATTCATGCTAAGAGGGTCACTATTATGCCCAAGGACA
TTCAGCTTGCTAGGCGGATCAGGGGTGAAAGGGCTTAGGAACTTTCTGAT
TTAATTTATTTTGTTCCTCTTACTGCGATGTTAGTCTTTCGGTCAATATT
TGGGGTTTAGATGAATGTTTGGATGTCTATCCGATGGATTAGATCGGGTC
TAGTATGTATCTAAGGTGTTTGTTAAAATGTTTTCGAGGGTTTTTAATCT
AATAGATAATTAGCCTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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