CK932862

Overview
NameCK932862
Unique NameCK932862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2M_SCHPO (Translation initiation factor IF-2, mitochondrial OS=Schizosaccharomyces pombe GN=SPBC1271.15c PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 46/131 (35.11%), Postives = 77/131 (58.78%), Query Frame = 2
Query:    5 LMHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVKPKF 397
            L H++IYHL+DD   L   + P     +V GEA +  IF++K    AK   V +AGCRV +G   +S  +RL+R+ ++++ G   SLK  K++V ++ KG ECG++++++ +   GD +Q   +    P F
Sbjct:  560 LFHNVIYHLMDDVRKLFALRLPPILVQRVTGEAIISAIFDIK----AKRAVVHVAGCRVTNGTIEKSHKIRLVRNDKIIWSGEIDSLKHLKEEVTSIKKGRECGILLKNFDEIVTGDKLQTFVEEYKPPDF 686          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_SULDN (Translation initiation factor IF-2 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=infB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   11 HSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQV 379
            +SIIY LLDD   +++      F     G+AEV N F        K     +AGC V+DG   R   +R++R G VV EG   SLKR K DVD +  G ECG++I+ + D  VGD+I+  ++V
Sbjct:  754 YSIIYQLLDDMTGMLMGMMAPKFSEINTGQAEVRNTF--------KAPKGMVAGCVVVDGKLIRGGLVRVIRDGVVVHEGELTSLKRFKDDVDEIGNGYECGVMIKGYDDVIVGDVIETFKKV 868          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_METPB (Translation initiation factor IF-2 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=infB PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 50/126 (39.68%), Postives = 71/126 (56.35%), Query Frame = 2
Query:   11 HSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +SIIY L+DD    +    P T   +  GEA++L IF++   SK      KIAGCRV++G   R + +RLLR+  V+ EG    LKR K D   V  G ECG+  +++ D +VGD I+C     +K
Sbjct:  869 YSIIYDLVDDIKATLSGMLPPTLREERLGEAQILQIFDV---SKVG----KIAGCRVMEGVVQRGAHVRLLRNDVVIHEGKLAQLKRLKDDAKEVTAGYECGMSFQNYQDMRVGDFIECFNVEEIK 987          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAW (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MW2) GN=infB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAT (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=infB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAS (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MSSA476) GN=infB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAR (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain MRSA252) GN=infB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAN (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain N315) GN=infB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAM (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=infB PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
BLAST of CK932862 vs. ExPASy Swiss-Prot
Match: IF2_STAAE (Translation initiation factor IF-2 OS=Staphylococcus aureus (strain Newman) GN=infB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.452e-17
Identity = 48/127 (37.80%), Postives = 76/127 (59.84%), Query Frame = 2
Query:    8 MHSIIYHLLDDFGNLVVDKAPGTFETQVAGEAEVLNIFELKGRSKAKGDDVKIAGCRVIDGCFTRSSTMRLLRSGEVVFEGSCISLKREKQDVDTVAKGNECGLVIRDWHDFQVGDIIQCLEQVLVK 388
            +H +IY+++++  + +       FE QV G+AEV   F++   SK       IAGC V +G  TR++ +R++R G V +EG   +LKR K D   VAKG ECG+ I +++D + GD+I+  E V +K
Sbjct:  585 LHRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKV---SKVG----TIAGCYVTEGKITRNAGVRIIRDGIVQYEGELDTLKRFKDDAKEVAKGYECGITIENYNDLKEGDVIEAFEMVEIK 704          
The following BLAST results are available for this feature:
BLAST of CK932862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF2M_SCHPO4.078e-1835.11Translation initiation factor IF-2, mitochondrial ... [more]
IF2_SULDN2.643e-1739.84Translation initiation factor IF-2 OS=Sulfurimonas... [more]
IF2_METPB2.643e-1739.68Translation initiation factor IF-2 OS=Methylobacte... [more]
IF2_STAAW3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAT3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAS3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAR3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAN3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAM3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]
IF2_STAAE3.452e-1737.80Translation initiation factor IF-2 OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_E12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932862 ID=CK932862; Name=CK932862; organism=Citrus sinensis; type=EST; length=693bp
GGGATTGATGCACAGCATAATATATCACCTTTTGGATGACTTTGGCAATT
TGGTAGTAGACAAGGCTCCTGGGACTTTTGAGACCCAGGTCGCTGGTGAG
GCTGAAGTGCTGAATATCTTTGAGCTTAAAGGAAGGAGCAAGGCCAAGGG
TGATGATGTGAAGATTGCAGGCTGCCGGGTTATTGATGGTTGTTTCACAA
GGTCATCAACCATGAGACTTCTGAGAAGTGGGGAAGTTGTGTTTGAAGGA
TCTTGCATATCCCTTAAGCGGGAGAAGCAGGATGTGGATACAGTAGCGAA
GGGGAATGAGTGTGGACTTGTGATACGTGATTGGCATGATTTCCAGGTTG
GAGACATCATCCAATGCTTGGAGCAAGTGCTAGTAAAACCCAAGTTTATT
TCATCAGAAAGTGGCACTGTTCGTATTGAGTGCTGAGAAATATCTGTTAG
TAATATCTTCAAGGATTTATTTAAGTACTCCTGTTATTTGATTGTTTGCC
TGTGCATTTTTGTTTAGCCTATGAAAATTTTGTCTGTTCCTGGTCAGCTT
CTAGACTTGCACCTGTCCGAAATGCCCATTATGCCACCATGGGGGTTGGT
AACAATGGCCCCGACTCCTGCCAATCTAGCATTACAGTTAACAGAAGTCA
AATTGGATTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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