CK932879

Overview
NameCK932879
Unique NameCK932879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2578 contig Csv1_Contig2578:210..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK932879 vs. ExPASy Swiss-Prot
Match: AGD11_ARATH (Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 2 
Query:    5 KDNTLVNDGIITLVDGKVKQEINLRLQNVERGVLEIELECVPLTQ 139
            K+NTLV+DGII L DGKVKQ+I+LRLQNVERGVLEI+LEC+PLTQ
Sbjct:  341 KENTLVSDGIILLEDGKVKQDISLRLQNVERGVLEIQLECLPLTQ 385
The following BLAST results are available for this feature:
BLAST of CK932879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AGD11_ARATH2.470e-1482.22Probable ADP-ribosylation factor GTPase-activating... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004350_D04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932879 ID=CK932879; Name=CK932879; organism=Citrus sinensis; type=EST; length=312bp
GGGGAAGGATAACACTCTAGTCAATGATGGCATCATAACCCTAGTAGATG
GGAAAGTGAAACAGGAAATCAATCTGCGGCTGCAAAATGTCGAGAGGGGG
GTGCTAGAAATAGAGCTCGAATGTGTCCCTCTAACTCAGTAGGTGCTGGA
ATATAGGTTGTAATGATAGAAGTGGTTATTGTTTGCAAAACTGTATTATA
GGAAACAATTGTAGCCTAGACTGACTAGCACATTGCCCGTATGTTTGTTC
TTCGTTAATATAAAAATCACAGAATACCAAGTCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
back to top