CK932887

Overview
NameCK932887
Unique NameCK932887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932887_ssr50 microsatellite CK932887_ssr50:50..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6157 contig Csv1_Contig6157:1..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 1.129e-87
Identity = 159/193 (82.38%), Postives = 165/193 (85.49%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAYT+VSELWRKKQSDVMRFLQRV  WEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVD AH AIRNDPRINW+C+PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WK
Sbjct:    1 MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWK 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.744e-86
Identity = 153/193 (79.27%), Postives = 163/193 (84.46%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY +VSELWRKKQSDVMRFLQRV  WEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+C+PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWK 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.744e-86
Identity = 153/193 (79.27%), Postives = 163/193 (84.46%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY +VSELWRKKQSDVMRFLQRV  WEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                     IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKY+E+ILVDPAHNA+RNDPRINW+C+PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK
Sbjct:    1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWK 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 8.374e-83
Identity = 146/193 (75.65%), Postives = 159/193 (82.38%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY ++ ELW+KKQSDVMRFLQRV  WEYRQ P IVR+T PTRPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+EV+LVD AH  IRNDPRINW+C+ VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.866e-82
Identity = 146/193 (75.65%), Postives = 161/193 (83.42%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY ++ ELW+KKQSDVMRFLQRV  WE+RQ P IVRVTRP+RPDKARRLGYKAKQ                     IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+DSTYKY+E+ILVD AH+AIR DPRINW+C+ VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:    1 MGAYKYIEELWKKKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 1.137e-63
Identity = 120/193 (62.18%), Postives = 135/193 (69.95%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY ++ EL RKKQSDV+RFLQRV  WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+C+PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWK
Sbjct:    1 MGAYKYLEELERKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWK 192          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 243.432 bits (620), Expect = 1.137e-63
Identity = 120/193 (62.18%), Postives = 134/193 (69.43%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGAY ++ EL RKKQSDV+RFLQRV  WEYRQ   I R  RPTRPDKARRLGYKAKQ                       YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+N+DSTYKYFEVILVDP H AIR D R NW+C PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWK
Sbjct:    1 MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWK 192          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 2.801e-62
Identity = 120/194 (61.86%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK 656
            MGAY ++ ELWRKKQSDVMRFL RV  W+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWR 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 238.81 bits (608), Expect = 2.801e-62
Identity = 120/194 (61.86%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWK 656
            MGAY ++ ELWRKKQSDVMRFL RV  W+YRQ  ++ R  RPTRPDKARRLGYKAKQ                       YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW+ EDSTYK+FEVIL+DP H AIR +P   W+  PVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+
Sbjct:    1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWR 193          
BLAST of CK932887 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.801e-62
Identity = 121/193 (62.69%), Postives = 136/193 (70.47%), Query Frame = 3
Query:   78 MGAYTFVSELWRKKQSDVMRFLQRVGRWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDPAHNAIRNDPRINWLCSPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 656
            MGA  ++ EL +KKQSDV+RFL RV  WE RQ   I R +RP+RPDKARRLGYKAKQ                       YGKPTNQGV QLK+QRS +S AEER GR+   LRVLNSYWIN+DSTYKYFEVILVDP H AIR DPRINW+ +PVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWK
Sbjct:    1 MGALKYLEELQKKKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWK 192          
The following BLAST results are available for this feature:
BLAST of CK932887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15_PETHY1.129e-8782.3860S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL152_ARATH4.744e-8679.2760S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL151_ARATH4.744e-8679.2760S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL15B_PICMA8.374e-8375.6560S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA1.866e-8275.6560S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15B_YEAST1.137e-6362.1860S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15A_YEAST1.137e-6362.1860S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_RAT2.801e-6261.8660S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB2.801e-6261.8660S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]
RL15_NEUCR2.801e-6262.6960S ribosomal protein L15 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_C04 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932887 ID=CK932887; Name=CK932887; organism=Citrus sinensis; type=EST; length=828bp
GGGGATAGCTCTCATCGTTTGCGAAAACCCTAGTCGCACGGATACTGCGC
AGCTCAGCTCAGCTCAGCTCAGAGCCAATGGGGGCTTACACGTTCGTGTC
GGAGCTATGGAGGAAGAAGCAGTCAGATGTGATGAGGTTCTTGCAGAGGG
TGGGGCGTTGGGAGTACCGCCAACATCCATCTATTGTTAGGGTCACCCGT
CCCACTCGACCTGACAAGGCTCGACGCTTGGGTTACAAGGCCAAGCAGGG
TTATGTTGTTTATCGTGTGCGGGTAAGGCGTGGTGGTCGGAAGAGGCCTG
TTCCCAAGGGCATTGTGTATGGTAAACCCACAAACCAGGGTGTTACTCAA
CTGAAGTTTCAGCGCAGCAAGAGGTCTGTTGCAGAGGAGCGTGCCGGTCG
TAAGTTGGGAGGTCTTAGGGTTCTCAATTCTTACTGGATCAATGAGGACT
CCACTTATAAGTACTTTGAGGTGATCTTGGTTGATCCTGCTCATAATGCC
ATCCGAAATGACCCAAGAATTAATTGGTTATGCAGTCCTGTCCATAAGCA
CAGGGAACTCCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTAC
GTGGAAAAGGACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACC
TGGAAGAGAAACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTT
ATGGTTTTGATGTTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATA
GTAGTTGCCATTTTGAGTCTTTTAGAGATTGAAATACTTATGGAACATAT
CTTATTTTGAAACCTTACATTCTAAATT
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