CK932894

Overview
NameCK932894
Unique NameCK932894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK932894_ssr10 microsatellite CK932894_ssr10:10..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9505 contig Csv1_Contig9505:22..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_CITUN (Defender against cell death 1 OS=Citrus unshiu GN=DAD1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.143e-56
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            STGKDAQALFHSLRSAYAATPTTLKIIDLY+GFAVFTALIQVVYM IVGSFPFNSFLSGVLSCVGTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STGKDAQALFHSLRSAYAATPTTLKIIDLYVGFAVFTALIQVVYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_SOLLC (Defender against cell death 1 OS=Solanum lycopersicum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 8.478e-52
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            S  KDAQALFHSLRSAYAATPT LKIIDLY+ FA+ TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    5 SATKDAQALFHSLRSAYAATPTNLKIIDLYVIFAISTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 116          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_MALDO (Defender against cell death 1 OS=Malus domestica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.224e-50
Identity = 99/112 (88.39%), Postives = 106/112 (94.64%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST +DA ALF SLRSAY+ATPTTLKIIDLY+GFAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLH+VIMNFLG
Sbjct:    8 STAQDAVALFDSLRSAYSATPTTLKIIDLYIGFAVSTALIQVVYMAIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHMVIMNFLG 119          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_ARATH (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 OS=Arabidopsis thaliana GN=DAD1 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 3.562e-50
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST KDAQ LF SLRSAY+ATPT LKIIDLY+ FAVFTALIQVVYM +VGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFRSLRSAYSATPTNLKIIDLYVVFAVFTALIQVVYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_BETVE (Defender against cell death 1 OS=Betula verrucosa GN=DAD1 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 4.652e-50
Identity = 98/112 (87.50%), Postives = 105/112 (93.75%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST KDAQAL  SLRSAYAATP+ LKIIDLY+ FAVFTALIQVVYM IVGSFPFN+FLSG+LSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STSKDAQALIQSLRSAYAATPSNLKIIDLYVVFAVFTALIQVVYMAIVGSFPFNAFLSGLLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIMNFLG 115          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD2_ARATH (Defender against cell death 2 OS=Arabidopsis thaliana GN=DAD2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.075e-50
Identity = 97/112 (86.61%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST KDAQ LFHSL SAY ATPT LKIIDLY+ FAVFTALIQV YM +VGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVI+NFLG
Sbjct:    4 STSKDAQDLFHSLHSAYTATPTNLKIIDLYVCFAVFTALIQVAYMALVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNLVLHLVIINFLG 115          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_PEA (Defender against cell death 1 OS=Pisum sativum GN=DAD1 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.334e-48
Identity = 95/112 (84.82%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST KDAQ LFH++ SAY+ATPT LKIIDLY+ FAVFTAL+Q VYM +VG FPFNSFLSGVLSCVGTA+LAVCLRIQVNK+NKEFKDL PERAFADFVLCNLVLHLVIMNFLG
Sbjct:    6 STTKDAQDLFHAIWSAYSATPTNLKIIDLYVVFAVFTALLQDVYMALVGPFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLGPERAFADFVLCNLVLHLVIMNFLG 117          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSJ (Defender against cell death 1 OS=Oryza sativa subsp. japonica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   71 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_ORYSI (Defender against cell death 1 OS=Oryza sativa subsp. indica GN=DAD1 PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.654e-47
Identity = 95/108 (87.96%), Postives = 99/108 (91.67%), Query Frame = 2
Query:   71 DAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            DA+ L  SL  AYAATPT LKIIDLY+ FAV TALIQVVYM IVGSFPFNSFLSGVLSC+GTA+LAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    7 DAKLLIQSLGKAYAATPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLSCIGTAVLAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 114          
BLAST of CK932894 vs. ExPASy Swiss-Prot
Match: DAD1_PICMA (Defender against cell death 1 OS=Picea mariana GN=DAD1 PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.161e-47
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = 2
Query:   59 STGKDAQALFHSLRSAYAATPTTLKIIDLYMGFAVFTALIQVVYMTIVGSFPFNSFLSGVLSCVGTAILAVCLRIQVNKDNKEFKDLPPERAFADFVLCNLVLHLVIMNFLG 394
            ST K+A AL  SLRSAY+ATPT LKIIDLY+ +A+ TA++QVVYM IVGSFPFN+FLSGVLSC GTA+LAVCLR+QVNK+N+EFKDLPPERAFADFVLCNLVLHLVIMNFLG
Sbjct:    4 STAKEAHALIASLRSAYSATPTKLKIIDLYVVYAILTAVVQVVYMAIVGSFPFNAFLSGVLSCTGTAVLAVCLRMQVNKENREFKDLPPERAFADFVLCNLVLHLVIMNFLG 115          
The following BLAST results are available for this feature:
BLAST of CK932894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
DAD1_CITUN1.143e-5697.32Defender against cell death 1 OS=Citrus unshiu GN=... [more]
DAD1_SOLLC8.478e-5290.18Defender against cell death 1 OS=Solanum lycopersi... [more]
DAD1_MALDO1.224e-5088.39Defender against cell death 1 OS=Malus domestica G... [more]
DAD1_ARATH3.562e-5087.50Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
DAD1_BETVE4.652e-5087.50Defender against cell death 1 OS=Betula verrucosa ... [more]
DAD2_ARATH6.075e-5086.61Defender against cell death 2 OS=Arabidopsis thali... [more]
DAD1_PEA3.334e-4884.82Defender against cell death 1 OS=Pisum sativum GN=... [more]
DAD1_ORYSJ1.654e-4787.96Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_ORYSI1.654e-4787.96Defender against cell death 1 OS=Oryza sativa subs... [more]
DAD1_PICMA2.161e-4781.25Defender against cell death 1 OS=Picea mariana GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_C11 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_C11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932894 ID=CK932894; Name=CK932894; organism=Citrus sinensis; type=EST; length=567bp
GGGGGTATCAGAGAGAGAGAGAGAGAGAGAGAGAGATTACAGAGAGGAAA
TGGCGAGATCGACCGGCAAAGACGCTCAAGCCCTTTTCCATTCCCTTCGC
TCTGCTTATGCTGCCACTCCCACAACTCTTAAGATCATCGATCTGTATAT
GGGTTTCGCGGTTTTTACTGCCTTAATTCAGGTAGTTTACATGACTATTG
TTGGATCCTTCCCATTCAACTCTTTTCTTTCGGGAGTACTTTCTTGTGTT
GGGACAGCCATACTTGCTGTTTGTCTACGTATTCAAGTGAACAAGGACAA
CAAGGAATTTAAGGACCTACCACCAGAGCGAGCTTTTGCGGACTTTGTTC
TCTGCAATTTGGTGCTGCATTTGGTGATCATGAATTTCCTTGGATAAACC
TTGACCCTGGGTCAACTTAAAATACAATTTTCTTGGTCGATGACAGTGTG
ACCTAGCTGTAAAAGTTAGTTACGACATTAATGCAGATATTTTTCATAGA
ATGTGAACTTACTATAAATGAAGACGTTGACCATTTTTGAAAAAAAAAAA
AAAAAAAAAAAAAAAAA
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