CK932895

Overview
NameCK932895
Unique NameCK932895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_NICSY (60S ribosomal protein L40 OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.941e-24
Identity = 50/52 (96.15%), Postives = 51/52 (98.08%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSLMALARKYNQDKMICRKCYARLHP AVNCR+KKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQLRPKKKIK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_ORYSJ (60S ribosomal protein L40 OS=Oryza sativa subsp. japonica GN=Ub-CEP52-1 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.013e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL ALARKYNQDKMICRKCYARLHP AVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_ARATH (60S ribosomal protein L40 OS=Arabidopsis thaliana GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.013e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSLM LARKYNQDKMICRKCYARLHP AVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_BRARA (60S ribosomal protein L40 OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.257e-23
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSLMALARKYNQ KMICRKCYARLHP AVNCRKKKCGHSNQLRPKKKIK
Sbjct:    1 IIEPSLMALARKYNQAKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_CHLRE (60S ribosomal protein L40 OS=Chlamydomonas reinhardtii GN=UBI1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.113e-21
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL ALARKYNQ+KMICRKCYARLHP A NCRKK CGH+NQLRPKKK+K
Sbjct:    1 IIEPSLQALARKYNQEKMICRKCYARLHPRAKNCRKKSCGHTNQLRPKKKLK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_SHEEP (60S ribosomal protein L40 OS=Ovis aries GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL  LA+KYN DKMICRKCYARLHP AVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_RAT (60S ribosomal protein L40 OS=Rattus norvegicus GN=Uba52 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL  LA+KYN DKMICRKCYARLHP AVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_PONAB (60S ribosomal protein L40 OS=Pongo abelii GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL  LA+KYN DKMICRKCYARLHP AVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_PIG (60S ribosomal protein L40 OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL  LA+KYN DKMICRKCYARLHP AVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
BLAST of CK932895 vs. ExPASy Swiss-Prot
Match: RL40_OPHHA (60S ribosomal protein L40 OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.370e-20
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 3
Query:   81 IIEPSLMALARKYNQDKMICRKCYARLHPGAVNCRKKKCGHSNQLRPKKKIK 236
            IIEPSL  LA+KYN DKMICRKCYARLHP AVNCRKKKCGH+N LRPKKK+K
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKVK 52          
The following BLAST results are available for this feature:
BLAST of CK932895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL40_NICSY5.941e-2496.1560S ribosomal protein L40 OS=Nicotiana sylvestris ... [more]
RL40_ORYSJ1.013e-2396.1560S ribosomal protein L40 OS=Oryza sativa subsp. j... [more]
RL40_ARATH1.013e-2396.1560S ribosomal protein L40 OS=Arabidopsis thaliana ... [more]
RL40_BRARA2.257e-2396.1560S ribosomal protein L40 OS=Brassica rapa PE=3 SV... [more]
RL40_CHLRE2.113e-2186.5460S ribosomal protein L40 OS=Chlamydomonas reinhar... [more]
RL40_SHEEP1.370e-2084.6260S ribosomal protein L40 OS=Ovis aries GN=UBA52 P... [more]
RL40_RAT1.370e-2084.6260S ribosomal protein L40 OS=Rattus norvegicus GN=... [more]
RL40_PONAB1.370e-2084.6260S ribosomal protein L40 OS=Pongo abelii GN=UBA52... [more]
RL40_PIG1.370e-2084.6260S ribosomal protein L40 OS=Sus scrofa GN=UBA52 P... [more]
RL40_OPHHA1.370e-2084.6260S ribosomal protein L40 OS=Ophiophagus hannah PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_C12 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932895 ID=CK932895; Name=CK932895; organism=Citrus sinensis; type=EST; length=269bp
TTTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTTGGTTTAAAATCCACT
CTTCATTTGGTGCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGAT
GGCTTTGGCTCGTAAATACAATCAGGATAAGATGATTTGCCGCAAATGTT
ATGCTCGTCTGCATCCCGGGGCTGTAAATTGCCGGAAGAAGAAATGTGGC
CACAGCAATCAGTTGAGGCCTAAGAAGAAGATCAAGTAAACCACTTGCCT
TAGTCATGATATGTGCCTT
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