CK932919

Overview
NameCK932919
Unique NameCK932919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Developing fruit juice sac at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12243 contig Csv1_Contig12243:75..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAP--PTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            LW A AGP   LPKKG++VVYFPQGHLE  A  S S     P FDL P+I+CRV +V+ L +K TD+VYT++TLLPL E    N +GKE+++L  + +R+G  S+   TP +F K L ASD S
Sbjct:   66 LWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNG-SSSVKRTPHMFCKTLTASDTS 187          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 1
Query:   85 NLMETIDAPSETETDDLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVD---NKRDGEGSTANSTPPLFYKKLRASDQS 603
            N+MET +  ++T+T    S  +S        +          +       L LW A AGP  SLPK+G LV+YFPQGHLE +   S +     + L P + CR+ DV+      TD+VY +++LLP  E +      +++++ ++D    + D E    ++TP +F K L ASD S
Sbjct:    8 NVMETEEDETQTQTPSSASGSVSPTSSSSASVSV-----VSSNSAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFSAA----IYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDI-----ERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTS 169          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.718e-15
Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 1
Query:  130 DLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEY--SAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            DLN+ E  DE++   E+  +    +    +     L LW A AGP   LP+KG +VVY PQGHLE+   APA+ + A     + P + CRV DV  L    TD+VY +++L+P  E V       E +D       DG        P +F K L ASD S
Sbjct:    5 DLNTVE-EDEEEAAEEVAANGS--SPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAA---VPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGED------GDGMKQRFARMPHMFCKTLTASDTS 152          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.544e-13
Identity = 43/121 (35.54%), Postives = 58/121 (47.93%), Query Frame = 1
Query:  241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            LW A AGP  SLP++G  VVY PQGHL  +      +      L P + CRV DV       TD+VY ++ L    E+   N  G  ++    D+  DG+    +    +F K L ASD S
Sbjct:   83 LWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVALPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIER--EDDMEDGDEERKSRMLHMFCKTLTASDTS 201          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  205 EISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            E++++    N  LW A AGP  SLP  G  VVYFPQGH E  A ++     S+ P   +L P++IC++ +V      +TD+VY +MTL PL P+ + + F   EL            G+ +      F K L ASD S
Sbjct:   19 EVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAEL------------GTASKQPTNYFCKTLTASDTS 144          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  205 EISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            E++++    N  LW A AGP  SLP  G  VVYFPQGH E  A ++     S+ P   +L P++IC++ +V      +TD+VY +MTL PL P+ + + F   EL            G+ +      F K L ASD S
Sbjct:   19 EVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAEL------------GTASKQPTNYFCKTLTASDTS 144          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 61/165 (36.97%), Postives = 78/165 (47.27%), Query Frame = 1
Query:  130 DLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEY--SAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKR-DGEGSTANSTPP----LFYKKLRASDQS 603
            DLN+ E  +ED+ EG   T  +     +       L LW A AGP   LP+KG  VVY PQGHLE+  +AP S     P   + P + CRV DV       TD+VY +++L+   E V    +  E      D    DGEG  A   P     +F K L ASD S
Sbjct:    5 DLNTVE-EEEDEEEGGA-TGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGS----GPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGE------DGAACDGEGEDAVKRPARIPHMFCKTLTASDTS 157          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPT----FDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPL--FYKKLRASDQS 603
            LW A AGP  ++P+ GDLV YFPQGH+E    AS+++   +    +DL  +++CRV +V     + TD+VY ++ L+P PE           Q+ +   K         + PP+  F K L ASD S
Sbjct:   25 LWHACAGPLVTVPRVGDLVFYFPQGHIE-QVEASMNQVADSQMRLYDLPSKLLCRVLNVELKAEQDTDEVYAQVMLMPEPE-----------QNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTS 139          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
Query:  208 ISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 462
            +   DD+    LW+A AGP   +P+ G+ V YFPQGH+E    ++    V +  P F+L P+I+CRV  V      +TD+VY ++TL P
Sbjct:   32 LGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQP 120          
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  232 NLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603
            N  LW A AGP  SLP  G  VVYFPQGH E  A ++     S+ P   +L P++IC++ +V      +TD+VY +MTL PL P+ + + +   EL            GS        F K L ASD S
Sbjct:   28 NSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAEL------------GSANKQPTNYFCKTLTASDTS 144          
The following BLAST results are available for this feature:
BLAST of CK932919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ARFD_ARATH4.469e-2652.03Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFC_ARATH3.792e-1732.39Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFO_ORYSJ2.718e-1536.25Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFC_ORYSJ2.544e-1335.54Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSJ1.262e-1236.23Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI1.262e-1236.23Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFB_ORYSJ1.649e-1236.97Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFD_ORYSJ3.673e-1235.43Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFK_ARATH4.797e-1239.33Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFQ_ORYSJ1.823e-1137.98Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004350_A05 Developing fruit juice sac at 38 DAFB Citrus sinensis cDNA clone JSJune0004_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK932919 ID=CK932919; Name=CK932919; organism=Citrus sinensis; type=EST; length=630bp
GGGGATTATCATTTGCTGCAATGTGTCGACTCTGACTGGCTTGTTTCATA
TTTTCTGTAAGTTTGAAAGTTTCGTTGGTCTCGTAATTTAATGGAAACAA
TTGATGCACCGAGCGAAACAGAAACGGATGATCTCAATTCCACAGAAATC
TCTGACGAGGATGATTGTGAGGGCGAAATAGAAACGGATGATCTCATTTT
CACAGAAATCTCTGACAAGGATGATGACTATAATTTGTTGCTCTGGCAAG
CTTTTGCTGGCCCTCCACCCTCACTGCCAAAGAAAGGAGACCTGGTTGTG
TATTTCCCGCAAGGTCATTTGGAATACTCTGCCCCTGCCTCTGTCTCAAA
AGCCCCACCCACATTTGATCTCAAACCTGAAATTATATGCAGGGTTGCAG
ATGTTCGGTATCTGGTTTCTAAGAAGACTGACAAGGTCTATACCAAGATG
ACTTTACTTCCTTTACCTGAGATGGTAGGTGAAAATTTTAAGGGCAAAGA
GCTTCAAGACTTGGTTGTGGACAACAAGAGGGATGGTGAGGGATCAACAG
CTAATTCCACCCCTCCCTTGTTTTACAAAAAGCTCAGAGCTTCCGATCAA
TCAAAAAAAAAAAGAAAAAAAAAAAAAAAA
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