CK932919
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 4.469e-26 Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAP--PTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 LW A AGP LPKKG++VVYFPQGHLE A S S P FDL P+I+CRV +V+ L +K TD+VYT++TLLPL E N +GKE+++L + +R+G S+ TP +F K L ASD S Sbjct: 66 LWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNG-SSSVKRTPHMFCKTLTASDTS 187
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 3.792e-17 Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 1 Query: 85 NLMETIDAPSETETDDLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVD---NKRDGEGSTANSTPPLFYKKLRASDQS 603 N+MET + ++T+T S +S + + L LW A AGP SLPK+G LV+YFPQGHLE + S + + L P + CR+ DV+ TD+VY +++LLP E + +++++ ++D + D E ++TP +F K L ASD S Sbjct: 8 NVMETEEDETQTQTPSSASGSVSPTSSSSASVSV-----VSSNSAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFSAA----IYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDI-----ERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTS 169
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.718e-15 Identity = 58/160 (36.25%), Postives = 79/160 (49.38%), Query Frame = 1 Query: 130 DLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEY--SAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 DLN+ E DE++ E+ + + + L LW A AGP LP+KG +VVY PQGHLE+ APA+ + A + P + CRV DV L TD+VY +++L+P E V E +D DG P +F K L ASD S Sbjct: 5 DLNTVE-EDEEEAAEEVAANGS--SPAPARAGAVCLELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAA---VPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGED------GDGMKQRFARMPHMFCKTLTASDTS 152
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.544e-13 Identity = 43/121 (35.54%), Postives = 58/121 (47.93%), Query Frame = 1 Query: 241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 LW A AGP SLP++G VVY PQGHL + + L P + CRV DV TD+VY ++ L E+ N G ++ D+ DG+ + +F K L ASD S Sbjct: 83 LWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVALPPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIER--EDDMEDGDEERKSRMLHMFCKTLTASDTS 201
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12 Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 205 EISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 E++++ N LW A AGP SLP G VVYFPQGH E A ++ S+ P +L P++IC++ +V +TD+VY +MTL PL P+ + + F EL G+ + F K L ASD S Sbjct: 19 EVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAEL------------GTASKQPTNYFCKTLTASDTS 144
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12 Identity = 50/138 (36.23%), Postives = 71/138 (51.45%), Query Frame = 1 Query: 205 EISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 E++++ N LW A AGP SLP G VVYFPQGH E A ++ S+ P +L P++IC++ +V +TD+VY +MTL PL P+ + + F EL G+ + F K L ASD S Sbjct: 19 EVAEEQKCLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAEL------------GTASKQPTNYFCKTLTASDTS 144
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12 Identity = 61/165 (36.97%), Postives = 78/165 (47.27%), Query Frame = 1 Query: 130 DLNSTEISDEDDCEGEIETDDLIFTEISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEY--SAPASVSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKR-DGEGSTANSTPP----LFYKKLRASDQS 603 DLN+ E +ED+ EG T + + L LW A AGP LP+KG VVY PQGHLE+ +AP S P + P + CRV DV TD+VY +++L+ E V + E D DGEG A P +F K L ASD S Sbjct: 5 DLNTVE-EEEDEEEGGA-TGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGS----GPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGE------DGAACDGEGEDAVKRPARIPHMFCKTLTASDTS 157
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12 Identity = 45/127 (35.43%), Postives = 67/127 (52.76%), Query Frame = 1 Query: 241 LWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPASVSKAPPT----FDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPLPEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPL--FYKKLRASDQS 603 LW A AGP ++P+ GDLV YFPQGH+E AS+++ + +DL +++CRV +V + TD+VY ++ L+P PE Q+ + K + PP+ F K L ASD S Sbjct: 25 LWHACAGPLVTVPRVGDLVFYFPQGHIE-QVEASMNQVADSQMRLYDLPSKLLCRVLNVELKAEQDTDEVYAQVMLMPEPE-----------QNEMAVEKTTPTSGPVQARPPVRSFCKTLTASDTS 139
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 4.797e-12 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1 Query: 208 ISDKDDDYNLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLP 462 + DD+ LW+A AGP +P+ G+ V YFPQGH+E ++ V + P F+L P+I+CRV V +TD+VY ++TL P Sbjct: 32 LGSNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFNLPPKILCRVLSVTLKAEHETDEVYAQITLQP 120
BLAST of CK932919 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11 Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = 1 Query: 232 NLLLWQAFAGPPPSLPKKGDLVVYFPQGHLEYSAPAS----VSKAPPTFDLKPEIICRVADVRYLVSKKTDKVYTKMTLLPL-PEMVGENFKGKELQDLVVDNKRDGEGSTANSTPPLFYKKLRASDQS 603 N LW A AGP SLP G VVYFPQGH E A ++ S+ P +L P++IC++ +V +TD+VY +MTL PL P+ + + + EL GS F K L ASD S Sbjct: 28 NSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPYLPAEL------------GSANKQPTNYFCKTLTASDTS 144 The following BLAST results are available for this feature:
BLAST of CK932919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CK932919 ID=CK932919; Name=CK932919; organism=Citrus sinensis; type=EST; length=630bpback to top |